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org.forester.surfacing
Interface DomainSimilarityCalculator

All Known Implementing Classes:
BasicDomainSimilarityCalculator
public interface DomainSimilarityCalculator

Nested Class Summary
static class DomainSimilarityCalculator.Detailedness
           
static class DomainSimilarityCalculator.GoAnnotationOutput
           
 
Method Summary
 SortedSet<DomainSimilarity> calculateSimilarities(PairwiseDomainSimilarityCalculator pairwise_calculator, List<GenomeWideCombinableDomains> cdc_list, boolean ignore_domains_without_combinations_in_any_genome, boolean ignore_domains_specific_to_one_genome)
           
 

Method Detail

calculateSimilarities

SortedSet<DomainSimilarity> calculateSimilarities(PairwiseDomainSimilarityCalculator pairwise_calculator,
                                                  List<GenomeWideCombinableDomains> cdc_list,
                                                  boolean ignore_domains_without_combinations_in_any_genome,
                                                  boolean ignore_domains_specific_to_one_genome)
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