org.biojava3.ws.alignment
Interface RemotePairwiseAlignmentOutputProperties

All Superinterfaces:

Serializable

All Known Implementing Classes:

NCBIQBlastOutputProperties

public interface RemotePairwiseAlignmentOutputProperties
extends Serializable

RemotePairwiseAlignmentOutputProperties: the simplest representation of an object capable of holding output formatting informations to be fed to a RemotePairwiseAlignmentService-implemented object.

Since:

Biojava 3

Author:

Sylvain Foisy, Diploide BioIT

Field Summary

static long

serialVersionUID

Method Summary

String	getOutputOption(String key) Method that returns the value associated with the key given in parameter.
Set<String>	getOutputOptions() Method to get all keys to the information stored in this object.
void	setOutputOption(String key, String val) Method to set the value for a specific output parameter using a key to store in a map.

Field Detail

serialVersionUID

static final long serialVersionUID

See Also:

Constant Field Values

Method Detail

getOutputOption

String getOutputOption(String key)
                       throws Exception

Method that returns the value associated with the key given in parameter.

Parameters:

key - :a String with the required key for this map.

Returns:

a String with the value associated with this key

Throws:

Exception - if key is not in the map of output options.

setOutputOption

void setOutputOption(String key,
                     String val)

Method to set the value for a specific output parameter using a key to store in a map.

Parameters:

key - :the key use to designate the value to be stored

val - :the actual value matched to key

getOutputOptions

Set<String> getOutputOptions()

Method to get all keys to the information stored in this object.

Returns:

a Set with all keys held in this instance of the object