org.biojava3.core.sequence.template
Interface SequenceView<C extends Compound>

All Superinterfaces:

Accessioned, Iterable<C>, Sequence<C>

All Known Implementing Classes:

ComplementSequenceView, ReversedSequenceView, RnaSequenceView, SequenceProxyView

public interface SequenceView<C extends Compound>
extends Sequence<C>

Method Summary

Integer	getBioEnd() 1-indexed, inclusive.
Integer	getBioStart() 1-indexed, inclusive.
Sequence<C>	getViewedSequence()

Methods inherited from interface org.biojava3.core.sequence.template.Sequence

countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence

Methods inherited from interface java.lang.Iterable

iterator

Methods inherited from interface org.biojava3.core.sequence.template.Accessioned

getAccession

Method Detail

getViewedSequence

Sequence<C> getViewedSequence()

getBioStart

Integer getBioStart()

1-indexed, inclusive.

getBioEnd

Integer getBioEnd()

1-indexed, inclusive.