Package org.biojava.bio.structure.align

Classes for the alignment of structures.

See:
Description

Interface Summary

StructureAlignment

Class Summary

AbstractStructureAlignment
AFPTwister
BioJavaStructureAlignment	Wrapper for the BioJava Structure Alignment Implementation
CallableStructureAlignment
ClusterAltAligs	A class that clusters alternative alignments according to their similarity.
FarmJob	A job as it can be run on the farm.
StrucAligParameters	A class that contains all the parameters of the structure alignment algorithm.
StructureAlignmentFactory
StructurePairAligner	Perform a pairwise protein structure superimposition.

Package org.biojava.bio.structure.align Description

Classes for the alignment of structures. This is the unpublished legacy implementation from the time, before BioJava supported CE and FATCAT alignments. See the StructurePairAligner for an example.