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| Class Summary | |
|---|---|
| AFPCalculator | a class that performs calculations on AFPCHains |
| AFPChainer | a class to chain AFPs to an alignment |
| AFPOptimizer | |
| AFPPostProcessor | does post processing after alignment chaingin |
| FatCatAligner | A class that does calculations on an AFPChain |
| FatCatParameters | |
| FCAlignHelper | |
| SigEva | |
| StructureAlignmentOptimizer | |
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