org.biojava.bio.structure
Class NucleotideImpl

java.lang.Object
  org.biojava.bio.structure.HetatomImpl
      org.biojava.bio.structure.NucleotideImpl

All Implemented Interfaces:

Serializable, Group

public class NucleotideImpl
extends HetatomImpl
implements Group, Serializable

A nucleotide group is almost the same as a Hetatm group.

Since:

1.4

Version:

%I% %G%

Author:

Andreas Prlic

See Also:

HetatomImpl, AminoAcidImpl, Serialized Form

Field Summary

static String

type this is a "nucleotide", a special occurance of a Hetatom.

Fields inherited from class org.biojava.bio.structure.HetatomImpl

atoms, pdb_flag, pdb_name, residueNumber

Constructor Summary

NucleotideImpl()

Method Summary

Object	clone() returns and identical copy of this Group object .
String	getType() Returns the type value.
String	toString()

Methods inherited from class org.biojava.bio.structure.HetatomImpl

addAltLoc, addAtom, clearAtoms, getAltLocs, getAtom, getAtom, getAtomByPDBname, getAtoms, getChain, getChainId, getChemComp, getId, getParent, getPDBCode, getPDBName, getProperties, getProperty, getResidueNumber, has3D, hasAltLoc, hasAminoAtoms, hasAtom, iterator, setAtoms, setChain, setChemComp, setId, setParent, setPDBCode, setPDBFlag, setPDBName, setProperties, setProperty, setResidueNumber, setResidueNumber, size

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.biojava.bio.structure.Group

addAltLoc, addAtom, clearAtoms, getAltLocs, getAtom, getAtom, getAtomByPDBname, getAtoms, getChain, getChainId, getChemComp, getParent, getPDBCode, getPDBName, getProperties, getProperty, getResidueNumber, has3D, hasAltLoc, hasAminoAtoms, hasAtom, iterator, setAtoms, setChain, setChemComp, setParent, setPDBCode, setPDBFlag, setPDBName, setProperties, setProperty, setResidueNumber, setResidueNumber, size

Field Detail

type

public static final String type

this is a "nucleotide", a special occurance of a Hetatom.

See Also:

Constant Field Values

Constructor Detail

NucleotideImpl

public NucleotideImpl()

Method Detail

getType

public String getType()

Description copied from class: HetatomImpl

Returns the type value.

Specified by:

getType in interface Group

Overrides:

getType in class HetatomImpl

Returns:

a String representing the type value

toString

public String toString()

Overrides:

toString in class HetatomImpl

clone

public Object clone()

Description copied from class: HetatomImpl

returns and identical copy of this Group object .

Specified by:

clone in interface Group

Overrides:

clone in class HetatomImpl

Returns:

and identical copy of this Group object