org.biojava.bio.structure.io
Class PDBSRSReader

java.lang.Object
  org.biojava.bio.structure.io.PDBSRSReader

All Implemented Interfaces:

StructureIO

public class PDBSRSReader
extends java.lang.Object
implements StructureIO

reads a PDB file from a local SRS installation using getz Actually is the same as PDBFileReader, but instead of reading from a file stream, reads from a buffered stream. if no matching PDB code found, returns null

Author:

Andreas Prlic

Constructor Summary

PDBSRSReader()

Method Summary

Structure

getStructureById(java.lang.String pdbId) load a structure from from SRS installation using wgetz returns null if no structure found

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PDBSRSReader

public PDBSRSReader()

Method Detail

getStructureById

public Structure getStructureById(java.lang.String pdbId)
                           throws java.io.IOException

load a structure from from SRS installation using wgetz returns null if no structure found

Specified by:

getStructureById in interface StructureIO

Parameters:

pdbId - a String specifying the id value (PDB code)

Returns:

a Structure object

Throws:

java.io.IOException - ...