org.biojava.bio.structure.io
Class DASStructureClient

java.lang.Object
  org.biojava.bio.structure.io.DASStructureClient

All Implemented Interfaces:

StructureIO

public class DASStructureClient
extends java.lang.Object
implements StructureIO

A DAS client that connects to a DAS structure service and returns a Biojava structure class.

Since:

1.4

Author:

Andreas Prlic

Constructor Summary

DASStructureClient(java.lang.String url)
Constructs a DASStructureClient object.

Method Summary

Structure

getStructureById(java.lang.String pdb_code) if pdb code is set (setId): connect to a DAS-structure service and retreive data.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DASStructureClient

public DASStructureClient(java.lang.String url)

Constructs a DASStructureClient object.

Parameters:

url - a String ...

Method Detail

getStructureById

public Structure getStructureById(java.lang.String pdb_code)
                           throws java.io.IOException

if pdb code is set (setId): connect to a DAS-structure service and retreive data.

Specified by:

getStructureById in interface StructureIO

Parameters:

pdb_code - a String, representing a PDB code e.g. 5pti

Returns:

the Structure object

Throws:

java.io.IOException - ...