org.biojava.bio.structure.gui.util
Class AlignmentCalc

java.lang.Object
  org.biojava.bio.structure.gui.util.AlignmentCalc

All Implemented Interfaces:

java.lang.Runnable

public class AlignmentCalc
extends java.lang.Object
implements java.lang.Runnable

A class that obtains two structures via DAS and aligns them This is done in a separate thread. It is possible to register Event listeners to get notification of when the download has finished.

Since:

1.7

Version:

%I% %G%

Author:

Andreas Prlic

Field Summary

static java.util.logging.Logger

logger

Constructor Summary

AlignmentCalc(AlignmentGui parent, Structure s1, Structure s2)
requests an alignment of pdb1 vs pdb 2.

Method Summary

void	cleanup()
void	interrupt() stops what is currently happening and does not continue
void	run()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

logger

public static java.util.logging.Logger logger

Constructor Detail

AlignmentCalc

public AlignmentCalc(AlignmentGui parent,
                     Structure s1,
                     Structure s2)

requests an alignment of pdb1 vs pdb 2. Chain 1 and chain2 are optional. If they are empty strings, they are ignored

Parameters:

parent - the alignment gui frame that interacts with this class

s1 - structure 1

s2 - structure 2

Method Detail

run

public void run()

Specified by:

run in interface java.lang.Runnable

interrupt

public void interrupt()

stops what is currently happening and does not continue

cleanup

public void cleanup()