org.biojava.bio.structure.align.pairwise
Class AligNPE

java.lang.Object
  org.biojava.bio.structure.align.pairwise.AligNPE

public class AligNPE
extends java.lang.Object

Constructor Summary

AligNPE()

Method Summary

static Alignable

align_NPE(Matrix sim, StrucAligParameters params) Align w/o penalizing endpags.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AligNPE

public AligNPE()

Method Detail

align_NPE

public static Alignable align_NPE(Matrix sim,
                                  StrucAligParameters params)

Align w/o penalizing endpags. Return alignment and score

Parameters:

sim - the similarity matrix

params - the structure alignment parameters to be used

Returns:

an Alignable