org.biojava.bio.search
Class BlastLikeSearchFilter.AbstractBlastLikeSearchFilter

java.lang.Object
  org.biojava.bio.search.BlastLikeSearchFilter.AbstractBlastLikeSearchFilter

All Implemented Interfaces:

java.io.Serializable, BlastLikeSearchFilter

Direct Known Subclasses:

BlastLikeSearchFilter.ByHitProperty, BlastLikeSearchFilter.BySearchProperty, BlastLikeSearchFilter.BySubHitProperty, BlastLikeSearchFilter.Not

Enclosing interface:

BlastLikeSearchFilter

public abstract static class BlastLikeSearchFilter.AbstractBlastLikeSearchFilter
extends java.lang.Object
implements BlastLikeSearchFilter

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.search.BlastLikeSearchFilter

BlastLikeSearchFilter.AbstractBlastLikeSearchFilter, BlastLikeSearchFilter.And, BlastLikeSearchFilter.ByHitProperty, BlastLikeSearchFilter.BySearchProperty, BlastLikeSearchFilter.BySubHitProperty, BlastLikeSearchFilter.Node, BlastLikeSearchFilter.Not, BlastLikeSearchFilter.Or

Field Summary

protected TriState

cachedOutcome

Fields inherited from interface org.biojava.bio.search.BlastLikeSearchFilter

KEY_QUERY_ID

Method Summary

TriState	accept() returns a TriState indicating the current outcome of evaluating this filter.
abstract void	evaluate(BlastLikeSearchFilter.Node fch) computes the outcome of this filter on the specified node and stores it.
void	reset() resets the internal state of this filter including any cached evaluations.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

cachedOutcome

protected TriState cachedOutcome

Method Detail

accept

public TriState accept()

Description copied from interface: BlastLikeSearchFilter

returns a TriState indicating the current outcome of evaluating this filter. This is usually the outcome saved when evaluate(FilteringContentHandler fch) was called.

Specified by:

accept in interface BlastLikeSearchFilter

evaluate

public abstract void evaluate(BlastLikeSearchFilter.Node fch)

Description copied from interface: BlastLikeSearchFilter

computes the outcome of this filter on the specified node and stores it. This method is only exposed to permit it to be included in an interface. Users should not use it.

Specified by:

evaluate in interface BlastLikeSearchFilter

reset

public void reset()

Description copied from interface: BlastLikeSearchFilter

resets the internal state of this filter including any cached evaluations. This method is only exposed to permit it to be included in an interface. Users should not use it.

Specified by:

reset in interface BlastLikeSearchFilter