org.biojava.bio.program.homologene
Class SimpleOrthoPairCollection

java.lang.Object
  org.biojava.bio.program.homologene.AbstractOrthoPairCollection
      org.biojava.bio.program.homologene.SimpleOrthoPairCollection

All Implemented Interfaces:

OrthoPairCollection

Direct Known Subclasses:

SimpleHomologeneDB

public class SimpleOrthoPairCollection
extends AbstractOrthoPairCollection

Nested Class Summary

class

SimpleOrthoPairCollection.Iterator

Field Summary

protected java.util.Set

groups

Constructor Summary

SimpleOrthoPairCollection()

Method Summary

void	add(OrthoPairSet group)
boolean	contains(OrthoPairSet group)
boolean	isEmpty()
OrthoPairCollection.Iterator	iterator()

Methods inherited from class org.biojava.bio.program.homologene.AbstractOrthoPairCollection

filter

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

groups

protected java.util.Set groups

Constructor Detail

SimpleOrthoPairCollection

public SimpleOrthoPairCollection()

Method Detail

add

public void add(OrthoPairSet group)

Specified by:

add in interface OrthoPairCollection

Specified by:

add in class AbstractOrthoPairCollection

contains

public boolean contains(OrthoPairSet group)

Specified by:

contains in interface OrthoPairCollection

Specified by:

contains in class AbstractOrthoPairCollection

isEmpty

public boolean isEmpty()

Specified by:

isEmpty in interface OrthoPairCollection

Specified by:

isEmpty in class AbstractOrthoPairCollection

iterator

public OrthoPairCollection.Iterator iterator()

Specified by:

iterator in interface OrthoPairCollection

Specified by:

iterator in class AbstractOrthoPairCollection