org.biojava.bio.dp
Class ScoreType.NullModel

java.lang.Object
  org.biojava.bio.dp.ScoreType.NullModel

All Implemented Interfaces:

java.io.Serializable, ScoreType

Enclosing interface:

ScoreType

public static class ScoreType.NullModel
extends java.lang.Object
implements ScoreType, java.io.Serializable

In this class, calculateScore returns the probability of a Symbol being emitted by the null model.

Author:

Matthew Pocock

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.dp.ScoreType

ScoreType.NullModel, ScoreType.Odds, ScoreType.Probability

Field Summary

Fields inherited from interface org.biojava.bio.dp.ScoreType

NULL_MODEL, ODDS, PROBABILITY

Constructor Summary

ScoreType.NullModel()

Method Summary

double

calculateScore(Distribution dist, Symbol sym) Calculates the score associated with a distribution and a symbol.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ScoreType.NullModel

public ScoreType.NullModel()

Method Detail

calculateScore

public double calculateScore(Distribution dist,
                             Symbol sym)
                      throws IllegalSymbolException

Description copied from interface: ScoreType

Calculates the score associated with a distribution and a symbol.

Specified by:

calculateScore in interface ScoreType

Throws:

IllegalSymbolException