org.biojava.bio.dist
Class DistributionFactory.DefaultDistributionFactory

java.lang.Object
  org.biojava.bio.dist.DistributionFactory.DefaultDistributionFactory

All Implemented Interfaces:

java.io.Serializable, DistributionFactory

Enclosing interface:

DistributionFactory

public static class DistributionFactory.DefaultDistributionFactory
extends java.lang.Object
implements DistributionFactory, java.io.Serializable

The default DistributionFactory implementation.

It knows about hand-optimized implementations for some alphabets (like DNA) without the optimized classes needing to be exposed from the DP package.

Author:

Matthew Pocock

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.biojava.bio.dist.DistributionFactory

DistributionFactory.DefaultDistributionFactory

Field Summary

Fields inherited from interface org.biojava.bio.dist.DistributionFactory

DEFAULT

Constructor Summary

DistributionFactory.DefaultDistributionFactory()

Method Summary

Distribution

createDistribution(Alphabet alpha) Generate a new Distribution as requested.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DistributionFactory.DefaultDistributionFactory

public DistributionFactory.DefaultDistributionFactory()

Method Detail

createDistribution

public Distribution createDistribution(Alphabet alpha)
                                throws IllegalAlphabetException

Description copied from interface: DistributionFactory

Generate a new Distribution as requested.

Specified by:

createDistribution in interface DistributionFactory

Parameters:

alpha - the emission alphabet for the state

Returns:

a new Distribution instance

Throws:

IllegalAlphabetException - if the factory is unable to generate a distribution for the required alphabet