RefGT

All Superinterfaces:

GT

All Known Implementing Classes:

BasicRefGT
```
public interface RefGT
extends GT
```
Interface RefGT represents phased, compressed, nonmissing genotype data for a list of markers and a list of reference samples.

All instances of RefGT are required to be immutable.

- Method Summary
  
  All Methods Instance Methods Abstract Methods
  Modifier and Type Method Description
  
  RefGTRec get(int marker)
  Returns the RefGTRec for the specified marker.
  - Methods inherited from interface vcf.GT
    allele, allele1, allele2, gl, isGTData, isPhased, isPhased, isPhased, marker, markers, nHaps, nMarkers, nSamples, samples

- Method Detail
  - get
```
RefGTRec get(int marker)
```
    Returns the RefGTRec for the specified marker.
    
    Parameters:
    
    marker - the marker index
    
    Returns:
    
    the RefGTRec for the specified marker
    
    Throws:
    
    java.lang.IndexOutOfBoundsException - if marker < 0 || marker >= this.nMarkers()