Package org.snpeff.vcf

Class VcfLof

java.lang.Object
org.snpeff.vcf.VcfLof
Direct Known Subclasses:
VcfNmd
public class VcfLof extends Object
An 'LOF' entry in a vcf line
Author:
pablocingolani

  • Constructor Details

    • VcfLof

      public VcfLof(Gene gene, double percentAffected)

    • VcfLof

      public VcfLof(String lofStr)

    • VcfLof

      public VcfLof(String geneName, String geneId, int numTranscripts, double percentAffected)

    • VcfLof

      public VcfLof(VcfEntry vcfEntry, String lofStr)

  • Method Details

    • fieldNum

      public static int fieldNum(String name)
      Convert from field name to field number

    • getGeneId

      public String getGeneId()

    • getGeneName

      public String getGeneName()

    • getNumTranscripts

      public int getNumTranscripts()

    • getPercentAffected

      public double getPercentAffected()

    • getPercentAffectedStr

      public String getPercentAffectedStr()

    • getVcfEntry

      public VcfEntry getVcfEntry()

    • toString

      public String toString()
      Overrides:
      toString in class Object