Package org.snpeff.stats

Class VcfStats

java.lang.Object
org.snpeff.stats.VcfStats
All Implemented Interfaces:
SamplingStats<VcfEntry>
public class VcfStats extends Object implements SamplingStats<VcfEntry>
VCF statistics: This are usually multi-sample statistics
Author:
pcingola

  • Constructor Details

    • VcfStats

      public VcfStats()

  • Method Details

    • getCountMultiallelic

      public int getCountMultiallelic()

    • getGenotypeStats

      public GenotypeStats getGenotypeStats()

    • getQualityStats

      public IntStats getQualityStats()

    • getQualityStatsHistoUrl

      public String getQualityStatsHistoUrl()

    • getTsTvStats

      public TsTvStats getTsTvStats()

    • getTsTvStatsKnown

      public TsTvStats getTsTvStatsKnown()

    • hasData

      public boolean hasData()
      Description copied from interface: SamplingStats
      Does this statistic have any data?
      Specified by:
      hasData in interface SamplingStats<VcfEntry>
      Returns:

    • sample

      public void sample(VcfEntry vcfEntry)
      Description copied from interface: SamplingStats
      Analyze one sample
      Specified by:
      sample in interface SamplingStats<VcfEntry>