org.snpeff.stats.ObservedOverExpectedCpG

public class ObservedOverExpectedCpG extends ObservedOverExpected

Observed over expected values (o/e) of CpG in a sequence

Constructor Details
- ObservedOverExpectedCpG
  
  public ObservedOverExpectedCpG()
Method Details
- expected
  
  public double expected(String sequence)
  
  Specified by:
  
  expected in class ObservedOverExpected
- observed
  
  public int observed(String sequence)
  
  Count the number of CpG in this sequence
  
  Specified by:
  
  observed in class ObservedOverExpected
  
  Parameters:
  
  sequence -
  
  Returns:

Class ObservedOverExpectedCpG

Constructor Summary