Package org.snpeff.stats

Class IntStats

java.lang.Object
org.snpeff.stats.IntStats
All Implemented Interfaces:
Serializable
public class IntStats extends Object implements Serializable
A simple class that does some basic statistics on integer numbers
Author:
pcingola
See Also:

  • Constructor Details

    • IntStats

      public IntStats()

  • Method Details

    • toStringTabTitle

      public static String toStringTabTitle()

    • getCount

      public int getCount()

    • getCount

      public int getCount(int sample)

    • getMax

      public int getMax()

    • getMaxBins

      public int getMaxBins()

    • getMaxCount

      public int getMaxCount()

    • getMean

      public double getMean()

    • getMedian

      public double getMedian()
      Calculate the median
      Returns:

    • getMin

      public int getMin()

    • getMinCount

      public int getMinCount()

    • getQuantile

      public double getQuantile(double quantile)
      Get value at a given quantile
      Parameters:
      quantile -
      Returns:

    • getStd

      public double getStd()
      Calculate the standard deviation
      Returns:

    • getSum

      public long getSum()

    • isValidData

      public boolean isValidData()
      Do we have any data
      Returns:

    • sample

      public void sample(int num)
      Use 'num' as a sample
      Parameters:
      num -

    • setMaxBins

      public void setMaxBins(int maxBins)

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • toStringCounts

      public String toStringCounts()
      Show a histogram as a list of numbers
      Returns:

    • toStringHisto

      public String toStringHisto()
      Show a histogram as a list of numbers
      Returns:

    • toStringPlot

      public String toStringPlot(String title, String xAxisLabel, boolean barChart)
      Create a histogram plot using Google charts
      Returns:

    • toStringTab

      public String toStringTab()

    • toStringValues

      public String toStringValues()
      Histogram values
      Returns: