Uses of Class
org.snpeff.snpEffect.testCases.unity.TestCasesBase
Packages that use TestCasesBase
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Uses of TestCasesBase in org.snpeff.snpEffect.testCases.integration
Subclasses of TestCasesBase in org.snpeff.snpEffect.testCases.integration -
Uses of TestCasesBase in org.snpeff.snpEffect.testCases.unity
Subclasses of TestCasesBase in org.snpeff.snpEffect.testCases.unityModifier and TypeClassDescriptionclassTest case for parsing ANN fieldsclassTest cases: apply a variant (DEL) to a transcriptclassTest cases: apply a variant (INS) to a transcriptclassTest cases: apply a variant (MIXED) to a transcriptclassTest cases: apply a variant (MNP) to a transcriptclassTest cases: apply a variant (SNP) to a transcriptclassTest caseclassTest caseclassTest random SNP changesclassTest random DEL changesclassclassTest Splice sites variantsclassTest caseclassTest case for FASTA file parsingclassTest cases for file index (chr:pos index on files)classTest case for basic HGV annotationsclassTest caseclassTest cases for HGVS's 'dup' on the negative strandclassTest caseclassTest random SNP changesclassTest intergenic markersclassclassTest random Interval Variants (e.g.classclassTest case for Jaspar parsingclassTest random SNP changesclassTest cases for protein interactionclassSeekable file reader test caseclassclassTest random SNP changesclassTest Splice sites variantsclassTest Splice sites variantsclassTest case Gene: geneId1 1:957-1157, strand: +, id:transcript_0, Protein Exons: 1:957-988 'exon_0_0', rank: 1, frame: ., sequence: gttgcttgaatactgtatagccttgccattgt 1:1045-1057 'exon_0_1', rank: 2, frame: ., sequence: tgtgttgctaact 1:1148-1157 'exon_0_2', rank: 3, frame: ., sequence: agacatggac CDS : gttgcttgaatactgtatagccttgccattgttgtgttgctaactagacatggac Protein : VA*ILYSLAIVVLLTRHG?classTest case for structural variants: DuplicationsclassTest cases for structural variants: InversionsclassTest cases for variant realignmentclassVCF parsing test casesclassTest playground