Class TestCasesHgvsDnaDup

Method Details

• init

  protected void init()

  Overrides:

  init in class TestCasesBase

• test_01

  @Test public void test_01()

• test_02

  @Test public void test_02()

• test_03

  @Test public void test_03()

  Test case from http://www.hgvs.org/mutnomen/recs-DNA.html g.5dupT (or g.5dup, not g.5_6insT) denotes a duplication ("insertion") of the T nucleotide at position 5 in the genomic reference sequence changing ACTCTGTGCC to ACTCTTGTGCC

• test_04

  @Test public void test_04()

  Test case from http://www.hgvs.org/mutnomen/recs-DNA.html g.7dupT (or g.7dup, not g.5dupT, not g.7_8insT) denotes a duplication ("insertion") of the T nucleotide at position 7 in the genomic reference sequence changing AGACTTTGTGCC to AGACTTTTGTGCC

• test_05

  @Test public void test_05()

  Test case from http://www.hgvs.org/mutnomen/recs-DNA.html g.7_8dup (or g.7_8dupTG, not g.5_6dup, not g.8_9insTG) denotes a TG duplication in the TG-tandem repeat sequence changing ACTTTGTGCC to ACTTTGTGTGCC

• test_06

  @Test public void test_06()

• test_07

  @Test public void test_07()

  Duplication with variant shifted towards 3-prime

• test_08

  @Test public void test_08()

  Duplication with variant shifted towards 3-prime

• test_09

  @Test public void test_09()

  Dup in intron

• test_10

  @Test public void test_10()

  Dup in exon-intron boundary

• test_11

  @Test public void test_11()

  Dup in intron-exon boundary