Package org.snpeff.snpEffect.testCases.unity

Class TestCasesFileIndexChrPos

java.lang.Object
org.snpeff.snpEffect.testCases.unity.TestCasesBase
org.snpeff.snpEffect.testCases.unity.TestCasesFileIndexChrPos
public class TestCasesFileIndexChrPos extends TestCasesBase
Test cases for file index (chr:pos index on files)
Author:
pcingola

  • Constructor Details

    • TestCasesFileIndexChrPos

      public TestCasesFileIndexChrPos()

  • Method Details

    • test_00_long_file

      @Test public void test_00_long_file()
      Test getting random lines from a file

    • test_00_short_file

      @Test public void test_00_short_file()
      Test getting random lines from a file

    • test_01

      @Test public void test_01() throws IOException
      Test : Find beginning of a chromosome
      Throws:
      IOException

    • test_02

      @Test public void test_02() throws IOException
      Test : Find a line
      Throws:
      IOException

    • test_03

      @Test public void test_03() throws IOException
      Test : Find a chr:pos
      Throws:
      IOException

    • test_04

      @Test public void test_04() throws IOException
      Test : Find a chr:pos
      Throws:
      IOException

    • test_05

      @Test public void test_05() throws IOException
      Test : Find a chr:pos that does not exists
      Throws:
      IOException

    • test_06

      @Test public void test_06()
      Test : Find a chr:pos that does not exists

    • test_07

      @Test public void test_07()
      Test : Find a chr:pos that does not exists

    • test_10

      @Test public void test_10()

    • test_11

      @Test public void test_11()
      Test : Find a chr:pos that does not exists

    • test_20

      @Test public void test_20()
      Test : Find a chr:pos that does not exists

    • test_21

      @Test public void test_21()
      Test : Find a chr:pos that does not exists

    • test_22

      @Test public void test_22()
      Test : Find a chr:pos that does not exists

    • test_23

      @Test public void test_23()
      Test : Dump small portions of a file

    • test_24

      @Test public void test_24()
      Test : Dump large portions of a file