Uses of Enum Class
org.snpeff.snpEffect.VariantEffect.EffectImpact
Packages that use VariantEffect.EffectImpact
Package
Description
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Uses of VariantEffect.EffectImpact in org.snpeff.interval.codonChange
Methods in org.snpeff.interval.codonChange with parameters of type VariantEffect.EffectImpactModifier and TypeMethodDescriptionprotected VariantEffectCodonChange.effectNoCodon(Marker marker, EffectType effectType, VariantEffect.EffectImpact effectImpact) -
Uses of VariantEffect.EffectImpact in org.snpeff.snpEffect
Fields in org.snpeff.snpEffect declared as VariantEffect.EffectImpactFields in org.snpeff.snpEffect with type parameters of type VariantEffect.EffectImpactModifier and TypeFieldDescriptionprotected List<VariantEffect.EffectImpact>VariantEffect.effectImpactsMethods in org.snpeff.snpEffect that return VariantEffect.EffectImpactModifier and TypeMethodDescriptionEffectType.effectImpact()Return effect impactVariantEffect.getEffectImpact()Return impact of this effectVariantEffects.highestImpact(String trId) Find the highest impact effect for transcript 'trId'static VariantEffect.EffectImpactReturns the enum constant of this class with the specified name.static VariantEffect.EffectImpact[]VariantEffect.EffectImpact.values()Returns an array containing the constants of this enum class, in the order they are declared.Methods in org.snpeff.snpEffect with parameters of type VariantEffect.EffectImpactModifier and TypeMethodDescriptionvoidVariantEffects.add(Variant variant, Marker marker, EffectType effectType, VariantEffect.EffectImpact effectImpact, String message) Add an effectvoidVariantEffect.addEffectImpact(VariantEffect.EffectImpact effectImpact) booleanVariantEffect.hasEffectImpact(VariantEffect.EffectImpact effectImpact) voidVariantEffect.set(Marker marker, EffectType effectType, VariantEffect.EffectImpact effectImpact, String message) voidVariantEffect.setEffectImpact(VariantEffect.EffectImpact effectImpact) Constructors in org.snpeff.snpEffect with parameters of type VariantEffect.EffectImpactModifierConstructorDescriptionVariantEffect(Variant variant, Marker marker, EffectType effectType, VariantEffect.EffectImpact effectImpact, String codonsOld, String codonsNew, int codonNum, int codonIndex, int cDnaPos) -
Uses of VariantEffect.EffectImpact in org.snpeff.snpEffect.testCases.unity
Methods in org.snpeff.snpEffect.testCases.unity with parameters of type VariantEffect.EffectImpactModifier and TypeMethodDescriptionprotected voidTestCasesBase.checkEffect(Variant variant, EffectType effectExpected, EffectType effectNotExpected, VariantEffect.EffectImpact impact) voidTestGenome.checkEffect(Variant variant, EffectType effectTypeExpected, VariantEffect.EffectImpact effectImpactExpected, int countMatchExpected) Apply a predictor to a variant and check whether the expected number of matches are foundprotected voidTestCasesStructuralDel.checkEffects(Variant variant, EffectType[] expEffs, String[] expHgvsp, String[] expHgvsc, VariantEffect.EffectImpact expectedImpact, String[] expAnns) protected voidTestCasesStructuralDup.checkEffects(Variant variant, EffectType[] expEffs, String[] expHgvsp, String[] expHgvsc, VariantEffect.EffectImpact expectedImpact, String[] expAnns) protected voidTestCasesStructuralInv.checkEffects(Variant variant, EffectType[] expEffs, String[] expHgvsc, VariantEffect.EffectImpact expectedImpact, String[] expAnns) protected voidTestCasesStructuralInv.checkEffects(Variant variant, EffectType[] expEffs, String[] expHgvsc, VariantEffect.EffectImpact expectedImpact, String[] expAnns, Gene[] genesToAdd) protected voidTestCasesStructuralTranslocations.checkEffects(Variant variant, EffectType[] expEffs, EffectType[] notExpEffs, String[] expHgvsp, String[] expHgvsc, VariantEffect.EffectImpact expectedImpact) -
Uses of VariantEffect.EffectImpact in org.snpeff.vcf
Methods in org.snpeff.vcf that return VariantEffect.EffectImpactMethods in org.snpeff.vcf with parameters of type VariantEffect.EffectImpact