Uses of Class org.snpeff.nextProt.NextProtXmlAnnotation (SnpEff 5.1 API)

Packages that use NextProtXmlAnnotation

Package

Description

org.snpeff.nextProt

Uses of NextProtXmlAnnotation in org.snpeff.nextProt

Methods in org.snpeff.nextProt that return types with arguments of type NextProtXmlAnnotation

Modifier and Type

Method

Description

List<NextProtXmlAnnotation>

NextProtXmlEntry.getAnnotations()

Methods in org.snpeff.nextProt with parameters of type NextProtXmlAnnotation

Modifier and Type

Method

Description

void

NextProtXmlEntry.add(NextProtXmlAnnotation ann)

Add an annotation

Markers

NextProtMarkerFactory.addMarkers(NextProtXmlEntry entry, NextProtXmlIsoform isoform, NextProtXmlAnnotation annotation, Location location, String trId)

Create markers and add them

Markers

NextProtMarkerFactory.nextProt(Transcript tr, NextProtXmlAnnotation annotation, Location location)

Create a list of NextProt markers according to this annotation