Class NextProtXmlAnnotation

Method Details

• addMarkers

  public void addMarkers(NextProtMarkerFactory markersFactory)

  Create all markers for this annotation

• description

  public String description()

• getCategory

  public String getCategory()

• getCvTerm

  public CvTerm getCvTerm()

• setCvTerm

  public void setCvTerm(CvTerm cvTerm)

• getDescription

  public String getDescription()

• setDescription

  public void setDescription(String description)

• getLocations

  public List<Location> getLocations()

• hasCvTerm

  public boolean hasCvTerm()

• isEmpty

  public boolean isEmpty()

• locationBeginPos

  public void locationBeginPos(Attributes attributes)

• locationEnd

  public void locationEnd()

  End of location tag

• locationEndPos

  public void locationEndPos(Attributes attributes)

• locationIsoformStart

  public void locationIsoformStart(String accession)

• locationStart

  public void locationStart(Attributes attributes)

• name

  public String name()

  Return an annotation "name" Clean up characters to make them compatible with VCF annotations

• toString

  public String toString()

  Overrides:

  toString in class Object

• toString

  public String toString(String prefix)