Uses of Class
org.snpeff.interval.codonChange.CodonChange
Packages that use CodonChange
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Uses of CodonChange in org.snpeff.interval.codonChange
Subclasses of CodonChange in org.snpeff.interval.codonChangeModifier and TypeClassDescriptionclassCalculate codon changes produced by a deletionclassCalculate codon changes produced by a duplicationclassCalculate codon changes produced by an insertionclassCalculate codon changes produced by a Interval Note: An interval does not produce any effect.classCalculate codon changes produced by an inversionclassCalculate codon changes produced by a 'mixed' variant Essentially every 'mixed' variant can be represented as a concatenation of a SNP/MNP + an INS/DELclassCalculate codon changes produced by a MNPclassCalculate codon changes produced by a SNPclassCalculate codon changes produced by a duplicationMethods in org.snpeff.interval.codonChange that return CodonChangeModifier and TypeMethodDescriptionstatic CodonChangeCodonChange.factory(Variant variant, Transcript transcript, VariantEffects variantEffects) Create a specific codon change for a variant