Uses of Enum Class
org.snpeff.interval.Variant.VariantType
Packages that use Variant.VariantType
Package
Description
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Uses of Variant.VariantType in org.snpeff.align
Methods in org.snpeff.align that return Variant.VariantTypeMethods in org.snpeff.align with parameters of type Variant.VariantTypeModifier and TypeMethodDescriptionvoidVcfRefAltAlign.setVariantType(Variant.VariantType variantType) -
Uses of Variant.VariantType in org.snpeff.interval
Fields in org.snpeff.interval declared as Variant.VariantTypeMethods in org.snpeff.interval that return Variant.VariantTypeModifier and TypeMethodDescriptionVariant.getVariantType()static Variant.VariantTypeReturns the enum constant of this class with the specified name.static Variant.VariantType[]Variant.VariantType.values()Returns an array containing the constants of this enum class, in the order they are declared.Methods in org.snpeff.interval with parameters of type Variant.VariantType -
Uses of Variant.VariantType in org.snpeff.snpEffect.testCases.unity
Methods in org.snpeff.snpEffect.testCases.unity with parameters of type Variant.VariantTypeModifier and TypeMethodDescriptionvoidTestCasesBase.checkApply(Variant variant, Variant.VariantType varType, String expectedCds, String expectedProtein, int exonRank, int expectedExon1Start, int expectedExon1End) Apply a variant to a transcript and check resulting CDS sequence, protein sequence and exon coordinates -
Uses of Variant.VariantType in org.snpeff.stats
Methods in org.snpeff.stats that return Variant.VariantType