Package org.snpeff.genotypes

Class Genotypes

java.lang.Object
org.snpeff.genotypes.Genotypes
All Implemented Interfaces:
Serializable
public class Genotypes extends Object implements Serializable
Simple test program
Author:
pcingola
See Also:

  • Field Details

    • MARK

      public static int MARK

  • Constructor Details

    • Genotypes

      public Genotypes()

  • Method Details

    • load

      public static Genotypes load(String fileName)
      Read from a file
      Parameters:
      fileName -

    • main

      public static void main(String[] args)

    • loadVcf

      public boolean loadVcf()
      Load data

    • parse

      public void parse(String[] args)
      Parse command line arguments

    • save

      public void save(String fileName)
      Save to file
      Parameters:
      fileName -

    • set

      public void set(int entryNum, int sampleNum, VcfGenotype vg)
      Set an entry