Package org.snpeff.geneSets

Class Result

java.lang.Object
org.snpeff.geneSets.Result
All Implemented Interfaces:
Comparable<Result>
public class Result extends Object implements Comparable<Result>
Store a result form a greedy search algorithm
Author:
Pablo Cingolani

  • Constructor Details

    • Result

      public Result()

    • Result

      public Result(GeneSet geneSet, org.apfloat.Apfloat pValue, int geneSetCount)

    • Result

      public Result(List<GeneSet> list, double pValue)

    • Result

      public Result(Result res)

  • Method Details

    • addGeneSetCount

      public void addGeneSetCount(int count)
      Add an item to the list of counts
      Parameters:
      count -

    • compareTo

      public int compareTo(Result res)
      Specified by:
      compareTo in interface Comparable<Result>

    • getGeneSetCount

      public List<Integer> getGeneSetCount()

    • getGeneSetCountLast

      public int getGeneSetCountLast()

    • getGeneSets

      public List<GeneSet> getGeneSets()

    • getLatestGeneSet

      public GeneSet getLatestGeneSet()

    • getPvalue

      public org.apfloat.Apfloat getPvalue()

    • getPvalueAdjusted

      public double getPvalueAdjusted()
      P-Value adjusted using
      Returns:

    • getPvalueDouble

      public double getPvalueDouble()

    • isEmpty

      public boolean isEmpty()

    • set

      public void set(List<GeneSet> geneSets, org.apfloat.Apfloat pValue)
      Ser a new list and pvalue
      Parameters:
      geneSets -
      pvalue -

    • setGeneSetCount

      public void setGeneSetCount(List<Integer> geneSetCount)

    • setGeneSetCountLast

      public void setGeneSetCountLast(int count)

    • setGeneSets

      public void setGeneSets(List<GeneSet> newGeneSets)
      Assign geneSets
      Parameters:
      newGeneSets -

    • setPvalue

      public void setPvalue(org.apfloat.Apfloat pValue)

    • setPvalue

      public void setPvalue(double pValue)

    • toString

      public String toString()
      Overrides:
      toString in class Object