java.lang.Object

org.snpeff.genBank.FeaturesFile

All Implemented Interfaces:: Iterable<Features>, Iterator<Features>

Direct Known Subclasses:: EmblFile, GenBankFile

public abstract class FeaturesFile extends Object implements Iterable<Features>, Iterator<Features>

A file containing one or more set of features (e.g. multiple chromosomes concatenated in a single file) Reference: http://www.insdc.org/documents/feature-table

Author:: pcingola

Constructor Summary

Constructors

Constructor

Description

FeaturesFile(String fileName)
Method Summary

Modifier and Type

Method

Description

boolean

hasNext()

Iterator<Features>

iterator()

Features

next()

protected void

open(String fileName)

Open a file

void

remove()

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.lang.Iterable
forEach, spliterator

Methods inherited from interface java.util.Iterator
forEachRemaining

Constructor Details
- FeaturesFile
  
  public FeaturesFile(String fileName)
Method Details
- hasNext
  
  public boolean hasNext()
  
  Specified by:
  
  hasNext in interface Iterator<Features>
- iterator
  
  public Iterator<Features> iterator()
  
  Specified by:
  
  iterator in interface Iterable<Features>
- next
  
  public Features next()
  
  Specified by:
  
  next in interface Iterator<Features>
- open
  
  protected void open(String fileName)
  
  Open a file
- remove
  
  public void remove()
  
  Specified by:
  
  remove in interface Iterator<Features>

Class FeaturesFile

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Methods inherited from interface java.lang.Iterable

Methods inherited from interface java.util.Iterator

Constructor Details

FeaturesFile

Method Details

hasNext

iterator

next

open

remove