Package org.snpeff.fileIterator

Class TableFile

java.lang.Object
org.snpeff.fileIterator.TableFile
All Implemented Interfaces:
Serializable
public class TableFile extends Object implements Serializable
Load a table from a file. The table is loaded into an arbitrary object having arrays to hold the data.
Author:
pcingola
See Also:

  • Field Details

    • FIELD_NAME_SEPARATOR

      protected static final char FIELD_NAME_SEPARATOR
      See Also:

    • size

      protected int size

    • verbose

      protected boolean verbose

    • hasTitle

      protected boolean hasTitle

    • fileName

      protected String fileName

    • separator

      protected String separator

    • fieldStr

      protected String fieldStr

    • fieldNames

      protected String[] fieldNames

    • fieldByName

      protected HashMap<String,Field> fieldByName

  • Constructor Details

    • TableFile

      public TableFile(int size)

    • TableFile

      public TableFile(String fileName)

    • TableFile

      public TableFile(String fileName, String fieldStr)

  • Method Details

    • assign

      protected void assign(String line, int idx)
      Assign values parse from 'line' into array elements indexed by 'idx'
      Parameters:
      line -
      idx -

    • initFields

      protected void initFields()
      Map field names to Field objects

    • load

      public void load()
      Load all data into memory

    • save

      public void save(String binaryFile)
      Save this object to a binary file (using Java serialization)
      Parameters:
      binaryFile -

    • size

      public int size()
      Array size
      Returns:

    • toString

      public String toString(int index)
      Return line number 'index' as a string
      Parameters:
      index -
      Returns: