LineSeqFileIterator (SnpEff 5.1 API)

java.lang.Object

org.snpeff.fileIterator.FileIterator<String>

org.snpeff.fileIterator.LineFileIterator

org.snpeff.fileIterator.LineSeqFileIterator

All Implemented Interfaces:: Iterable<String>, Iterator<String>

public class LineSeqFileIterator extends LineFileIterator

One line per sequence. Actually it is exactly the same as LineFilteIterator

Author:: pcingola

Field Summary

Fields

Modifier and Type

Field

Description

static boolean

debug

Fields inherited from class org.snpeff.fileIterator.FileIterator
autoClose, countNewLineChars, fileName, fileSize, line, lineNum, next, nextLine, reader, verbose
Constructor Summary

Constructors

Constructor

Description

LineSeqFileIterator(String lineSeqFileName)
Method Summary

Methods inherited from class org.snpeff.fileIterator.LineFileIterator
iterator, readNext

Methods inherited from class org.snpeff.fileIterator.FileIterator
close, countNewLineChars, getFilePointer, getLine, getLineNum, guessNewLineChars, hasNext, hasSeek, init, isDebug, load, next, readLine, ready, remove, seek, setAutoClose, setDebug, setVerbose, toString

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.lang.Iterable
forEach, spliterator

Methods inherited from interface java.util.Iterator
forEachRemaining

Field Details
- debug
  
  public static boolean debug
Constructor Details
- LineSeqFileIterator
  
  public LineSeqFileIterator(String lineSeqFileName)