BlastResultFileIterator (SnpEff 5.1 API)

java.lang.Object

org.snpeff.fileIterator.FileIterator<T>

org.snpeff.fileIterator.LineClassFileIterator<BlastResultEntry>

org.snpeff.fileIterator.BlastResultFileIterator

All Implemented Interfaces:: Iterable<BlastResultEntry>, Iterator<BlastResultEntry>

public class BlastResultFileIterator extends LineClassFileIterator<BlastResultEntry>

Iterate on each line of a GWAS catalog (TXT format)

Author:: pcingola

Field Summary

Fields inherited from class org.snpeff.fileIterator.LineClassFileIterator
clazz, debug, FIELD_NAME_SEPARATOR, fieldByName, fieldNames, fieldStr, separator

Fields inherited from class org.snpeff.fileIterator.FileIterator
autoClose, countNewLineChars, fileName, fileSize, line, lineNum, next, nextLine, reader, verbose
Constructor Summary

Constructors

Constructor

Description

BlastResultFileIterator(String fileName)
Method Summary

Methods inherited from class org.snpeff.fileIterator.LineClassFileIterator
createObject, fieldMap, iterator, readNext, setSeparator

Methods inherited from class org.snpeff.fileIterator.FileIterator
close, countNewLineChars, getFilePointer, getLine, getLineNum, guessNewLineChars, hasNext, hasSeek, init, isDebug, load, next, readLine, ready, remove, seek, setAutoClose, setDebug, setVerbose, toString

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.lang.Iterable
forEach, spliterator

Methods inherited from interface java.util.Iterator
forEachRemaining

Constructor Details
- BlastResultFileIterator
  
  public BlastResultFileIterator(String fileName)