Uses of Class
org.snpeff.codons.CodonTable
Packages that use CodonTable
Package
Description
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Uses of CodonTable in org.snpeff.codons
Methods in org.snpeff.codons that return CodonTableModifier and TypeMethodDescriptionGet a codon table by nameGet default genome-wide codon tableGet a codon table WARNING: It will return the standard codon table if nothing if foundMethods in org.snpeff.codons that return types with arguments of type CodonTableMethods in org.snpeff.codons with parameters of type CodonTableModifier and TypeMethodDescriptionvoidCodonTables.add(CodonTable codonTable) Add a codon tablevoidCodonTables.set(Genome genome, CodonTable codonTable) Set a codon table for a all chromosomes in a genome I.e.: Default genome-wide chromosome tablevoidCodonTables.set(Genome genome, Chromosome chr, CodonTable codonTable) Set a codon table for a given genome & chromosome -
Uses of CodonTable in org.snpeff.interval
Methods in org.snpeff.interval that return CodonTableModifier and TypeMethodDescriptionMarker.codonTable()Get a suitable codon tableChromosome.getCodonTable() -
Uses of CodonTable in org.snpeff.snpEffect
Constructors in org.snpeff.snpEffect with parameters of type CodonTable -
Uses of CodonTable in org.snpeff.snpEffect.testCases.unity
Fields in org.snpeff.snpEffect.testCases.unity declared as CodonTable