SequenceReference (SnpEff 5.1 API)

java.lang.Object

org.snpeff.binseq.comparator.SequenceReference

public class SequenceReference extends Object

A reference to a sequence. It's composed by a sequence index and a start position (both are integres stored in a long)

Author:: pcingola

Constructor Summary

Constructors

Constructor

Description

SequenceReference()
Method Summary

Modifier and Type

Method

Description

static long

getReference(int sequenceIdx, int start)

static int

getSeqIdx(long ref)

static int

getStart(long ref)

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- SequenceReference
  
  public SequenceReference()
Method Details
- getReference
  
  public static long getReference(int sequenceIdx, int start)
- getSeqIdx
  
  public static int getSeqIdx(long ref)
- getStart
  
  public static int getStart(long ref)