Uses of Class
org.snpeff.binseq.DnaAndQualitySequence
Packages that use DnaAndQualitySequence
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Uses of DnaAndQualitySequence in org.snpeff.binseq
Subclasses of DnaAndQualitySequence in org.snpeff.binseqModifier and TypeClassDescriptionclassDnaAndQualitySequence with an IDMethods in org.snpeff.binseq that return DnaAndQualitySequenceModifier and TypeMethodDescriptionstatic DnaAndQualitySequenceDnaAndQualitySequence.empty()DnaAndQualitySequence.overlap(BinarySequence sequence, int start) Creates a new sequence by overlapping 'this' and 'sequence' E.g.DnaAndQualitySequence.read(DataInputStream dataInStream) Read data in binary formatDnaAndQualitySequence.reverseWc() -
Uses of DnaAndQualitySequence in org.snpeff.binseq.comparator
Methods in org.snpeff.binseq.comparator with parameters of type DnaAndQualitySequenceModifier and TypeMethodDescriptionintDnaQualSubsequenceComparator.compare(DnaAndQualitySequence seq1, int index1, DnaAndQualitySequence seq2, int index2) intDnaQualSubsequenceComparator.score(DnaAndQualitySequence seq1, int index1, DnaAndQualitySequence seq2, int index2)