raptor::build_arguments Struct Reference

#include <raptor/argument_parsing/build_arguments.hpp>

Public Attributes
uint8_t	kmer_size {20u}
uint32_t	window_size {kmer_size}
window	window_size_strong {kmer_size}
std::string	shape_string {}
seqan3::shape	shape {seqan3::ungapped{kmer_size}}
bool	compute_minimiser {false}
bool	disable_cutoffs {false}
std::filesystem::path	out_path {"./"}
std::string	size {"1k"}
uint64_t	bins {64}
uint64_t	bits {4096}
uint64_t	hash {2}
uint8_t	parts {1u}
double	fpr {0.05}
bool	compressed {false}
std::vector< std::vector< std::string > >	bin_path {}
std::filesystem::path	bin_file {}
uint8_t	threads {1u}
bool	is_socks {false}
bool	is_hibf {false}
bool	is_minimiser {false}

Member Data Documentation

bin_file

std::filesystem::path raptor::build_arguments::bin_file {}

bin_path

std::vector<std::vector<std::string> > raptor::build_arguments::bin_path {}

bins

uint64_t raptor::build_arguments::bins {64}

bits

uint64_t raptor::build_arguments::bits {4096}

compressed

bool raptor::build_arguments::compressed {false}

compute_minimiser

bool raptor::build_arguments::compute_minimiser {false}

disable_cutoffs

bool raptor::build_arguments::disable_cutoffs {false}

fpr

double raptor::build_arguments::fpr {0.05}

hash

uint64_t raptor::build_arguments::hash {2}

is_hibf

bool raptor::build_arguments::is_hibf {false}

is_minimiser

bool raptor::build_arguments::is_minimiser {false}

is_socks

bool raptor::build_arguments::is_socks {false}

kmer_size

uint8_t raptor::build_arguments::kmer_size {20u}

out_path

std::filesystem::path raptor::build_arguments::out_path {"./"}

parts

uint8_t raptor::build_arguments::parts {1u}

shape

seqan3::shape raptor::build_arguments::shape {seqan3::ungapped{kmer_size}}

shape_string

std::string raptor::build_arguments::shape_string {}

size

std::string raptor::build_arguments::size {"1k"}

threads

uint8_t raptor::build_arguments::threads {1u}

window_size

uint32_t raptor::build_arguments::window_size {kmer_size}

window_size_strong

window raptor::build_arguments::window_size_strong {kmer_size}

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The documentation for this struct was generated from the following file:

• include/raptor/argument_parsing/build_arguments.hpp