raptor::threshold Namespace Reference

Classes
struct	forward_strand_minimiser
class	threshold
struct	threshold_parameters

Functions
std::vector< double >	multiple_error_model (size_t const number_of_minimisers, size_t const errors, std::vector< double > const &affected_by_one_error_prob)
std::vector< double >	one_error_model (size_t const kmer_size, double const p_mean, std::vector< double > const &affected_by_one_error_indirectly_prob)
std::vector< double >	one_indirect_error_model (size_t const pattern_size, size_t const window_size, seqan3::shape const shape)
std::vector< double >	pascal_row (size_t const n)
std::vector< size_t >	precompute_correction (threshold_parameters const &arguments)
std::vector< size_t >	precompute_threshold (threshold_parameters const &arguments)
void	impl (size_t const minimisers_to_affect, std::vector< double > const &affected_by_one_error_prob, std::vector< size_t > affected_by_error, size_t const current_error, double &result)
std::string const	correction_filename (threshold_parameters const &arguments)
void	write_correction (std::vector< size_t > const &vec, threshold_parameters const &arguments)
bool	read_correction (std::vector< size_t > &vec, threshold_parameters const &arguments)
std::string const	threshold_filename (threshold_parameters const &arguments)
void	write_thresholds (std::vector< size_t > const &vec, threshold_parameters const &arguments)
bool	read_thresholds (std::vector< size_t > &vec, threshold_parameters const &arguments)

Function Documentation

correction_filename()

std::string const raptor::threshold::correction_filename

(

threshold_parameters const &

arguments

)

impl()

void raptor::threshold::impl	(	size_t const	minimisers_to_affect,
		std::vector< double > const &	affected_by_one_error_prob,
		std::vector< size_t >	affected_by_error,
		size_t const	current_error,
		double &	result
	)

multiple_error_model()

std::vector< double > raptor::threshold::multiple_error_model	(	size_t const	number_of_minimisers,
		size_t const	errors,
		std::vector< double > const &	affected_by_one_error_prob
	)

one_error_model()

std::vector< double > raptor::threshold::one_error_model	(	size_t const	kmer_size,
		double const	p_mean,
		std::vector< double > const &	affected_by_one_error_indirectly_prob
	)

one_indirect_error_model()

std::vector< double > raptor::threshold::one_indirect_error_model	(	size_t const	pattern_size,
		size_t const	window_size,
		seqan3::shape const	shape
	)

pascal_row()

std::vector< double > raptor::threshold::pascal_row

(

size_t const

n

)

precompute_correction()

std::vector< size_t > raptor::threshold::precompute_correction

(

threshold_parameters const &

arguments

)

precompute_threshold()

std::vector< size_t > raptor::threshold::precompute_threshold

(

threshold_parameters const &

arguments

)

read_correction()

bool raptor::threshold::read_correction	(	std::vector< size_t > &	vec,
		threshold_parameters const &	arguments
	)

read_thresholds()

bool raptor::threshold::read_thresholds	(	std::vector< size_t > &	vec,
		threshold_parameters const &	arguments
	)

threshold_filename()

std::string const raptor::threshold::threshold_filename

(

threshold_parameters const &

arguments

)

write_correction()

void raptor::threshold::write_correction	(	std::vector< size_t > const &	vec,
		threshold_parameters const &	arguments
	)

write_thresholds()

void raptor::threshold::write_thresholds	(	std::vector< size_t > const &	vec,
		threshold_parameters const &	arguments
	)