libStatGen Software 1
Public Attributes | List of all members
Weight Struct Reference

Weight includes various penalties(e.g. More...

#include <GreedyTupleAligner.h>

Public Attributes

int gapOpen
 
int gapExtend
 
int mismatch
 
int match
 

Detailed Description

Weight includes various penalties(e.g.

gap open) used in local alignment

Definition at line 40 of file GreedyTupleAligner.h.

Constructor & Destructor Documentation

◆ Weight()

Weight::Weight ( )
inline

Definition at line 43 of file GreedyTupleAligner.h.

44 {
45 gapOpen = gapExtend = -1; // here we do not use affine gap penalty for simlicity.
46 mismatch = -1;
47 match= 2;
48 };

Member Data Documentation

◆ gapExtend

int Weight::gapExtend

Definition at line 50 of file GreedyTupleAligner.h.

◆ gapOpen

int Weight::gapOpen

Definition at line 49 of file GreedyTupleAligner.h.

◆ match

int Weight::match

Definition at line 52 of file GreedyTupleAligner.h.

◆ mismatch

int Weight::mismatch

Definition at line 51 of file GreedyTupleAligner.h.

The documentation for this struct was generated from the following file: