Package org.jmol.shapespecial

Class Polyhedron

  • public class Polyhedron
extends java.lang.Object

    • Constructor Summary

      Constructors 
      Constructor Description
      Polyhedron()  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      int[] getElemNos()  
      (package private) java.util.Map<java.lang.String,​java.lang.Object> getInfo​(Viewer vwr, java.lang.String property)  
      short[] getNormixes()  
      (package private) java.lang.String getState​(Viewer vwr)  
      (package private) java.lang.String getSymmetry​(Viewer vwr, boolean withPointGroup)  
      private java.lang.Float getVolume()
      allows for n-gon, not just triangle; if last component index is negative, then that's a mesh code
      (package private) void move​(javajs.util.M4 mat, BS bsMoved)  
      (package private) Polyhedron set​(java.lang.String id, int modelIndex, javajs.util.P3 atomOrPt, javajs.util.P3[] points, int nPoints, int vertexCount, int[][] triangles, int triangleCount, int[][] faces, int[][] faceTriangles, javajs.util.V3[] normals, BS bsFlat, boolean collapsed, float distanceRef, float pointScale)  
      (package private) Polyhedron setInfo​(Viewer vwr, java.util.Map<java.lang.String,​SV> info, Atom[] at)  
      (package private) void setOffset​(javajs.util.P3 value)  
      private int[][] toInt2​(SV o)  
      private float triangleArea​(int i, int j, int k, javajs.util.V3 vAB, javajs.util.V3 vAC, javajs.util.V3 vTemp)  
      private float triangleVolume​(int i, int j, int k, javajs.util.V3 vAB, javajs.util.V3 vAC, javajs.util.V3 vTemp)  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Field Detail

      • info

        java.util.Map<java.lang.String,​java.lang.Object> info

      • id

        public java.lang.String id

      • center

        public javajs.util.P3 center

      • centralAtom

        public Atom centralAtom

      • vertices

        public javajs.util.P3[] vertices

      • triangles

        public int[][] triangles

      • faces

        public int[][] faces

      • nVertices

        int nVertices

      • collapsed

        public boolean collapsed

      • bsFlat

        private BS bsFlat

      • distanceRef

        private float distanceRef

      • normals

        private javajs.util.V3[] normals

      • normixes

        private short[] normixes

      • smiles

        public java.lang.String smiles

      • smarts

        public java.lang.String smarts

      • polySmiles

        public java.lang.String polySmiles

      • pointGroup

        private SymmetryInterface pointGroup
        includes vertices as atoms, with atomic numbers

      • pointGroupFamily

        private SymmetryInterface pointGroupFamily
        includes vertices as generic points

      • volume

        private java.lang.Float volume

      • visible

        boolean visible

      • isFullyLit

        boolean isFullyLit

      • isValid

        public boolean isValid

      • colixEdge

        public short colixEdge

      • visibilityFlags

        public int visibilityFlags

      • colix

        public short colix

      • modelIndex

        public int modelIndex

      • offset

        private javajs.util.P3 offset

      • scale

        public float scale

      • pointScale

        public float pointScale

      • faceTriangles

        private int[][] faceTriangles

      • elemNos

        private int[] elemNos

    • Constructor Detail

      • Polyhedron

        Polyhedron()

    • Method Detail

      • set

        Polyhedron set​(java.lang.String id,
               int modelIndex,
               javajs.util.P3 atomOrPt,
               javajs.util.P3[] points,
               int nPoints,
               int vertexCount,
               int[][] triangles,
               int triangleCount,
               int[][] faces,
               int[][] faceTriangles,
               javajs.util.V3[] normals,
               BS bsFlat,
               boolean collapsed,
               float distanceRef,
               float pointScale)

      • toInt2

        private int[][] toInt2​(SV o)

      • getInfo

        java.util.Map<java.lang.String,​java.lang.Object> getInfo​(Viewer vwr,
                                                               java.lang.String property)

      • getElemNos

        public int[] getElemNos()

      • getSymmetry

        java.lang.String getSymmetry​(Viewer vwr,
                             boolean withPointGroup)

      • getVolume

        private java.lang.Float getVolume()
        allows for n-gon, not just triangle; if last component index is negative, then that's a mesh code
        Returns:
        volume

      • triangleArea

        private float triangleArea​(int i,
                           int j,
                           int k,
                           javajs.util.V3 vAB,
                           javajs.util.V3 vAC,
                           javajs.util.V3 vTemp)

      • triangleVolume

        private float triangleVolume​(int i,
                             int j,
                             int k,
                             javajs.util.V3 vAB,
                             javajs.util.V3 vAC,
                             javajs.util.V3 vTemp)

      • getState

        java.lang.String getState​(Viewer vwr)

      • move

        void move​(javajs.util.M4 mat,
          BS bsMoved)

      • getNormixes

        public short[] getNormixes()

      • setOffset

        void setOffset​(javajs.util.P3 value)