Trace

java.lang.Object
- org.jmol.shape.Shape
- - org.jmol.shapebio.BioShapeCollection
  - - org.jmol.shapebio.Trace

public class Trace
extends BioShapeCollection

Field Summary

Fields
Modifier and Type	Field	Description
`private static int`	`PUTTY_AbsoluteLinear`
`private static int`	`PUTTY_AbsoluteNonlinear`
`private static int`	`PUTTY_ImpliedRMS`
`private static int`	`PUTTY_NormalizedLinear`
`private static int`	`PUTTY_NormalizedNonlinear`
`private static int`	`PUTTY_RelativeLinear`
`private static int`	`PUTTY_RelativeNonlinear`
`private static int`	`PUTTY_ScaledLinear`
`private static int`	`PUTTY_ScaledNonlinear`

Fields inherited from class org.jmol.shapebio.BioShapeCollection
atoms, bioShapes, isActive, madDnaRna, madHelixSheet, madOn, madTurnRandom

Fields inherited from class org.jmol.shape.Shape
bsColixSet, bsSizeSet, isBioShape, ms, myType, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr

Constructor Summary

Constructors
Constructor Description

Trace()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`initShape()`
`void`	`setProperty(java.lang.String propertyName, java.lang.Object value, BS bsSelected)`
`private void`	`setPutty(float[] info, BS bsAtoms)`	PyMOL-based "putty"

Methods inherited from class org.jmol.shapebio.BioShapeCollection
findNearestAtomIndex, getBioShape, getMpsShapeCount, getShapeState, getSizeG, initialize, initModelSet, replaceGroup, setAtomClickability, setModelVisibilityFlags, setPropBSC, setShapeSizeRD

Methods inherited from class org.jmol.shape.Shape
appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getIndexFromName, getProperty, getPropertyData, getPropShape, getShapeDetail, getSize, getTranslucentLabel, initializeShape, setModelSet, setPropS, setSize, setSizeRD, wasClicked

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- PUTTY_NormalizedNonlinear
```
private static final int PUTTY_NormalizedNonlinear
```
  See Also:
  
  Constant Field Values
- PUTTY_RelativeNonlinear
```
private static final int PUTTY_RelativeNonlinear
```
  See Also:
  
  Constant Field Values
- PUTTY_ScaledNonlinear
```
private static final int PUTTY_ScaledNonlinear
```
  See Also:
  
  Constant Field Values
- PUTTY_AbsoluteNonlinear
```
private static final int PUTTY_AbsoluteNonlinear
```
  See Also:
  
  Constant Field Values
- PUTTY_NormalizedLinear
```
private static final int PUTTY_NormalizedLinear
```
  See Also:
  
  Constant Field Values
- PUTTY_RelativeLinear
```
private static final int PUTTY_RelativeLinear
```
  See Also:
  
  Constant Field Values
- PUTTY_ScaledLinear
```
private static final int PUTTY_ScaledLinear
```
  See Also:
  
  Constant Field Values
- PUTTY_AbsoluteLinear
```
private static final int PUTTY_AbsoluteLinear
```
  See Also:
  
  Constant Field Values
- PUTTY_ImpliedRMS
```
private static final int PUTTY_ImpliedRMS
```
  See Also:
  
  Constant Field Values

Constructor Detail
- Trace
```
public Trace()
```

Method Detail

initShape
```
public void initShape()
```
Overrides:

initShape in class BioShapeCollection

setProperty

public void setProperty(java.lang.String propertyName,
                        java.lang.Object value,
                        BS bsSelected)

Overrides:: setProperty in class BioShapeCollection

setPutty
```
private void setPutty(float[] info,
                      BS bsAtoms)
```
PyMOL-based "putty"

Parameters:

info - [quality,radius,range,scale_min,scale_max,scale_power,transform]

bsAtoms -