Backbone

java.lang.Object
- org.jmol.shape.Shape
- - org.jmol.shapebio.BioShapeCollection
  - - org.jmol.shapebio.Backbone

public class Backbone
extends BioShapeCollection

Field Summary

Fields
Modifier and Type Field Description

(package private) BS bsSelected
- Fields inherited from class org.jmol.shapebio.BioShapeCollection
  atoms, bioShapes, isActive, madDnaRna, madHelixSheet, madOn, madTurnRandom
- Fields inherited from class org.jmol.shape.Shape
  bsColixSet, bsSizeSet, isBioShape, ms, myType, RADIUS_MAX, shapeID, translucentAllowed, translucentLevel, vf, vwr

Constructor Summary

Constructors
Constructor Description

Backbone()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`addDisplayedBackbone(Atom a, boolean isVisible)`
`void`	`initShape()`
`void`	`setAtomClickability()`
`void`	`setProperty(java.lang.String propertyName, java.lang.Object value, BS bsSelected)`
`void`	`setShapeSizeRD(int size, RadiusData rd, BS bsSelected)`

Methods inherited from class org.jmol.shapebio.BioShapeCollection
findNearestAtomIndex, getBioShape, getMpsShapeCount, getShapeState, getSizeG, initialize, initModelSet, replaceGroup, setModelVisibilityFlags, setPropBSC

Methods inherited from class org.jmol.shape.Shape
appendCmd, checkBoundsMinMax, checkObjectClicked, checkObjectDragged, checkObjectHovered, coordinateInRange, encodeColor, getColix, getColixA, getColixB, getColixI, getColorCommand, getColorCommandUnk, getFontCommand, getIndexFromName, getProperty, getPropertyData, getPropShape, getShapeDetail, getSize, getTranslucentLabel, initializeShape, setModelSet, setPropS, setSize, setSizeRD, wasClicked

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail
- bsSelected
```
BS bsSelected
```

Constructor Detail
- Backbone
```
public Backbone()
```

Method Detail

initShape
```
public void initShape()
```
Overrides:

initShape in class BioShapeCollection

setProperty

public void setProperty(java.lang.String propertyName,
                        java.lang.Object value,
                        BS bsSelected)

Overrides:: setProperty in class BioShapeCollection

setShapeSizeRD

public void setShapeSizeRD(int size,
                           RadiusData rd,
                           BS bsSelected)

Overrides:: setShapeSizeRD in class BioShapeCollection

addDisplayedBackbone

public void addDisplayedBackbone(Atom a,
                                 boolean isVisible)

setAtomClickability
```
public void setAtomClickability()
```
Overrides:

setAtomClickability in class BioShapeCollection