Field Detail

• vwr

  protected Viewer vwr

• script

  protected java.lang.String script

• isStateScript

  protected boolean isStateScript

• lineCurrent

  protected short lineCurrent

• iCommand

  protected int iCommand

• ichCurrentCommand

  protected int ichCurrentCommand

• ichComment

  protected int ichComment

• ichEnd

  protected int ichEnd

• ichToken

  protected int ichToken

• theToken

  protected T theToken

• lastFlowCommand

  protected T lastFlowCommand

• tokenCommand

  protected T tokenCommand

• lastToken

  protected T lastToken

• tokenAndEquals

  protected T tokenAndEquals

• theTok

  protected int theTok

• nTokens

  protected int nTokens

• tokCommand

  protected int tokCommand

• ptNewSetModifier

  protected int ptNewSetModifier

• isNewSet

  protected boolean isNewSet

• haveMacro

  protected boolean haveMacro

• logMessages

  protected boolean logMessages

• atokenInfix

  protected T[] atokenInfix

• itokenInfix

  protected int itokenInfix

• isSetBrace

  protected boolean isSetBrace

• isMathExpressionCommand

  protected boolean isMathExpressionCommand

• isSetOrDefine

  protected boolean isSetOrDefine

• ltokenPostfix

  private javajs.util.Lst<T> ltokenPostfix

• isEmbeddedExpression

  protected boolean isEmbeddedExpression

• isCommaAsOrAllowed

  protected boolean isCommaAsOrAllowed

• theValue

  private java.lang.Object theValue

• htUserFunctions

  protected java.util.Map<java.lang.String,​java.lang.Boolean> htUserFunctions

• haveString

  boolean haveString

• residueSpecCodeGenerated

  private boolean residueSpecCodeGenerated

• errorMessage

  protected java.lang.String errorMessage

• errorMessageUntranslated

  protected java.lang.String errorMessageUntranslated

• errorLine

  protected java.lang.String errorLine

• errorType

  protected java.lang.String errorType

• ERROR_badArgumentCount

  protected static final int ERROR_badArgumentCount

  See Also:

  Constant Field Values

• ERROR_badContext

  protected static final int ERROR_badContext

  See Also:

  Constant Field Values

• ERROR_commandExpected

  protected static final int ERROR_commandExpected

  See Also:

  Constant Field Values

• ERROR_endOfCommandUnexpected

  protected static final int ERROR_endOfCommandUnexpected

  See Also:

  Constant Field Values

• ERROR_invalidExpressionToken

  protected static final int ERROR_invalidExpressionToken

  See Also:

  Constant Field Values

• ERROR_missingEnd

  protected static final int ERROR_missingEnd

  See Also:

  Constant Field Values

• ERROR_tokenExpected

  protected static final int ERROR_tokenExpected

  See Also:

  Constant Field Values

• ERROR_tokenUnexpected

  protected static final int ERROR_tokenUnexpected

  See Also:

  Constant Field Values

• ERROR_unrecognizedParameter

  protected static final int ERROR_unrecognizedParameter

  See Also:

  Constant Field Values

• ERROR_unrecognizedToken

  protected static final int ERROR_unrecognizedToken

  See Also:

  Constant Field Values

• ERROR_coordinateExpected

  private static final int ERROR_coordinateExpected

  See Also:

  Constant Field Values

• ERROR_endOfExpressionExpected

  private static final int ERROR_endOfExpressionExpected

  See Also:

  Constant Field Values

• ERROR_identifierOrResidueSpecificationExpected

  private static final int ERROR_identifierOrResidueSpecificationExpected

  See Also:

  Constant Field Values

• ERROR_invalidAtomSpecification

  private static final int ERROR_invalidAtomSpecification

  See Also:

  Constant Field Values

• ERROR_invalidChainSpecification

  private static final int ERROR_invalidChainSpecification

  See Also:

  Constant Field Values

• ERROR_invalidModelSpecification

  private static final int ERROR_invalidModelSpecification

  See Also:

  Constant Field Values

• ERROR_numberExpected

  private static final int ERROR_numberExpected

  See Also:

  Constant Field Values

• ERROR_numberOrVariableNameExpected

  private static final int ERROR_numberOrVariableNameExpected

  See Also:

  Constant Field Values

• ERROR_residueSpecificationExpected

  private static final int ERROR_residueSpecificationExpected

  See Also:

  Constant Field Values

• ERROR_unrecognizedExpressionToken

  private static final int ERROR_unrecognizedExpressionToken

  See Also:

  Constant Field Values

Constructor Detail

• ScriptTokenParser

  ScriptTokenParser()

Method Detail

• compileExpressions

  protected boolean compileExpressions()

• compileExpression

  protected boolean compileExpression()

• isUserFunction

  protected boolean isUserFunction​(java.lang.String name)

• isExpressionNext

  private boolean isExpressionNext()

• tokenAttr

  protected static boolean tokenAttr​(T token,
                                     int tok)

• moreTokens

  private boolean moreTokens()

• tokAt

  protected int tokAt​(int i)

• tokPeek

  private int tokPeek()

• tokPeekIs

  private boolean tokPeekIs​(int tok)

• intPeek

  private int intPeek()

• valuePeek

  private java.lang.Object valuePeek()

• tokenNext

  private T tokenNext()

  increments the pointer; does NOT set theToken or theValue

  Returns:

  the next token

• tokenNextTok

  private boolean tokenNextTok​(int tok)

• returnToken

  private boolean returnToken()

• getToken

  private T getToken()

  gets the next token and sets global theToken and theValue

  Returns:

  the next token

• getNumericalToken

  private boolean getNumericalToken()

• floatValue

  private float floatValue()

• addTokenToPostfix

  private boolean addTokenToPostfix​(int tok,
                                    java.lang.Object value)

• addTokenToPostfixInt

  private boolean addTokenToPostfixInt​(int tok,
                                       int intValue,
                                       java.lang.Object value)

• addTokenToPostfixToken

  private boolean addTokenToPostfixToken​(T token)

• addNextToken

  private boolean addNextToken()

• addNextTokenIf

  private boolean addNextTokenIf​(int tok)

• addSubstituteTokenIf

  private boolean addSubstituteTokenIf​(int tok,
                                       T token)

• clauseOr

  private boolean clauseOr​(boolean allowCommaAsOr)

• clauseAnd

  private boolean clauseAnd()

• clauseNot

  private boolean clauseNot()

• clausePrimitive

  private boolean clausePrimitive()

• checkForCoordinate

  private boolean checkForCoordinate​(boolean isImplicitExpression)

• checkForItemSelector

  private boolean checkForItemSelector​(boolean allowNumeric)

• clauseWithin

  private boolean clauseWithin​(boolean isWithin)

• clauseConnected

  private boolean clauseConnected​(boolean isPolyhedra)

• clauseSubstructure

  private boolean clauseSubstructure()

• clauseItemSelector

  private boolean clauseItemSelector()

• clauseComparator

  private boolean clauseComparator​(boolean isOptional)

• addCompare

  private boolean addCompare​(T tokenAtomProperty,
                             T tokenComparator)

• clauseCell

  private boolean clauseCell​(int tok)

• clauseDefine

  private boolean clauseDefine​(boolean haveToken,
                               boolean forceString)

• generateResidueSpecCode

  private boolean generateResidueSpecCode​(T token)

• clauseResidueSpec

  private boolean clauseResidueSpec()

• clauseResNameSpec

  private boolean clauseResNameSpec()

  [a] or just a

  Returns:

  true if handled

• clauseSequenceSpec

  private boolean clauseSequenceSpec()

• getSequenceCode

  private T getSequenceCode​(boolean isSecond)

• clauseChainSpec

  private boolean clauseChainSpec​(int tok)

  [:] [chars] [:] ["chars"] [:] [*] [:] [0-9] [:] [?] [:] (empty chain)

  Parameters:

  tok -

  Returns:

  true if chain handled

• clauseAlternateSpec

  private boolean clauseAlternateSpec()

  check for %x or % (null alternate)

  Returns:

  true if no error

• isTerminator

  private boolean isTerminator​(int tok)

  we allow : and % to have null values

  Parameters:

  tok -

  Returns:

  true if terminating

• clauseModelSpec

  private boolean clauseModelSpec()

  process /1 /1.1 / * or just /

  Returns:

  true if no error

• fixModelSpec

  private int fixModelSpec​(T token)

• clauseAtomSpec

  private boolean clauseAtomSpec()

• errorString

  static java.lang.String errorString​(int iError,
                                      java.lang.String value,
                                      java.lang.String more,
                                      boolean translated)

• commandExpected

  protected boolean commandExpected()

• error

  protected boolean error​(int error)

• errorStr

  protected boolean errorStr​(int error,
                             java.lang.String value)

• errorIntStr2

  protected boolean errorIntStr2​(int iError,
                                 java.lang.String value,
                                 java.lang.String more)

• isError

  private boolean isError()

• errorStr2

  protected boolean errorStr2​(java.lang.String errorMessage,
                              java.lang.String strUntranslated)