Field Detail

• UPDATE_NEVER

  protected static final int UPDATE_NEVER

  See Also:

  Constant Field Values

• UPDATE_ALL

  private static final int UPDATE_ALL

  See Also:

  Constant Field Values

• UPDATE_CONFIG

  private static final int UPDATE_CONFIG

  See Also:

  Constant Field Values

• UPDATE_SHOW

  private static final int UPDATE_SHOW

  See Also:

  Constant Field Values

• vwr

  protected Viewer vwr

• updateMode

  protected int updateMode

• menuText

  protected java.util.Properties menuText

• frankPopup

  private javajs.api.SC frankPopup

• nFrankList

  private int nFrankList

• itemMax

  private int itemMax

• titleWidthMax

  private int titleWidthMax

• nullModelSetName

  private java.lang.String nullModelSetName

• modelSetName

  private java.lang.String modelSetName

• modelSetFileName

  private java.lang.String modelSetFileName

• modelSetRoot

  private java.lang.String modelSetRoot

• currentFrankId

  private java.lang.String currentFrankId

• configurationSelected

  private java.lang.String configurationSelected

• altlocs

  private java.lang.String altlocs

• frankList

  private java.lang.Object[][] frankList

• modelSetInfo

  private java.util.Map<java.lang.String,​java.lang.Object> modelSetInfo

• modelInfo

  private java.util.Map<java.lang.String,​java.lang.Object> modelInfo

• NotPDB

  private javajs.util.Lst<javajs.api.SC> NotPDB

• PDBOnly

  private javajs.util.Lst<javajs.api.SC> PDBOnly

• FileUnitOnly

  private javajs.util.Lst<javajs.api.SC> FileUnitOnly

• FileMolOnly

  private javajs.util.Lst<javajs.api.SC> FileMolOnly

• UnitcellOnly

  private javajs.util.Lst<javajs.api.SC> UnitcellOnly

• SingleModelOnly

  private javajs.util.Lst<javajs.api.SC> SingleModelOnly

• FramesOnly

  private javajs.util.Lst<javajs.api.SC> FramesOnly

• VibrationOnly

  private javajs.util.Lst<javajs.api.SC> VibrationOnly

• Special

  private javajs.util.Lst<javajs.api.SC> Special

• SymmetryOnly

  private javajs.util.Lst<javajs.api.SC> SymmetryOnly

• ChargesOnly

  private javajs.util.Lst<javajs.api.SC> ChargesOnly

• TemperatureOnly

  private javajs.util.Lst<javajs.api.SC> TemperatureOnly

• fileHasUnitCell

  private boolean fileHasUnitCell

• haveBFactors

  private boolean haveBFactors

• haveCharges

  private boolean haveCharges

• isLastFrame

  private boolean isLastFrame

• isMultiConfiguration

  private boolean isMultiConfiguration

• isMultiFrame

  private boolean isMultiFrame

• isPDB

  private boolean isPDB

• hasSymmetry

  private boolean hasSymmetry

• isUnitCell

  private boolean isUnitCell

• isVibration

  private boolean isVibration

• isZapped

  private boolean isZapped

• modelIndex

  private int modelIndex

• modelCount

  private int modelCount

• ac

  private int ac

• group3List

  private java.lang.String group3List

• group3Counts

  private int[] group3Counts

• cnmrPeaks

  private javajs.util.Lst<java.lang.String> cnmrPeaks

• hnmrPeaks

  private javajs.util.Lst<java.lang.String> hnmrPeaks

• MENUITEM_HEIGHT

  private static final int MENUITEM_HEIGHT

  See Also:

  Constant Field Values

• noZapped

  private final java.lang.String[] noZapped

Constructor Detail

• JmolGenericPopup

  public JmolGenericPopup()

Method Detail

• initialize

  protected void initialize​(Viewer vwr,
                            PopupResource bundle,
                            java.lang.String title)

• jpiDispose

  public void jpiDispose()

• jpiGetMenuAsObject

  public javajs.api.SC jpiGetMenuAsObject()

• jpiShow

  public void jpiShow​(int x,
                      int y)

• jpiUpdateComputedMenus

  public void jpiUpdateComputedMenus()

• appCheckItem

  protected void appCheckItem​(java.lang.String item,
                              javajs.api.SC newMenu)

  Specified by:

  appCheckItem in class GenericSwingPopup

• appFixLabel

  protected java.lang.String appFixLabel​(java.lang.String label)

  Specified by:

  appFixLabel in class GenericSwingPopup

• appFixScript

  protected java.lang.String appFixScript​(java.lang.String id,
                                          java.lang.String script)

  Specified by:

  appFixScript in class GenericSwingPopup

• appGetBooleanProperty

  protected boolean appGetBooleanProperty​(java.lang.String name)

  Specified by:

  appGetBooleanProperty in class GenericSwingPopup

• appGetMenuAsString

  protected java.lang.String appGetMenuAsString​(java.lang.String title)

  Specified by:

  appGetMenuAsString in class GenericSwingPopup

• appIsSpecialCheckBox

  protected boolean appIsSpecialCheckBox​(javajs.api.SC item,
                                         java.lang.String basename,
                                         java.lang.String what,
                                         boolean TF)

  Specified by:

  appIsSpecialCheckBox in class GenericSwingPopup

• appRestorePopupMenu

  protected void appRestorePopupMenu()

  Specified by:

  appRestorePopupMenu in class GenericSwingPopup

• appRunScript

  protected void appRunScript​(java.lang.String script)

  Specified by:

  appRunScript in class GenericSwingPopup

• appUpdateSpecialCheckBoxValue

  protected void appUpdateSpecialCheckBoxValue​(javajs.api.SC item,
                                               java.lang.String what,
                                               boolean TF)

  (1) setOption --> set setOption true or set setOption false

  Specified by:

  appUpdateSpecialCheckBoxValue in class GenericSwingPopup

  Parameters:

  item -

  what - option to set

  TF - true or false

• setFrankMenu

  private void setFrankMenu​(java.lang.String id)

• checkBoolean

  private boolean checkBoolean​(java.lang.String key)

• getViewerData

  private void getViewerData()

• appCheckSpecialMenu

  protected void appCheckSpecialMenu​(java.lang.String item,
                                     javajs.api.SC subMenu,
                                     java.lang.String word)

  Specified by:

  appCheckSpecialMenu in class GenericSwingPopup

• appUpdateForShow

  protected void appUpdateForShow()

  Specified by:

  appUpdateForShow in class GenericSwingPopup

• updateFileMenu

  private void updateFileMenu()

• getMenuText

  private java.lang.String getMenuText​(java.lang.String key)

• updateSelectMenu

  private void updateSelectMenu()

• updateElementsComputedMenu

  private void updateElementsComputedMenu​(BS elementsPresentBitSet)

• updateSpectraMenu

  private void updateSpectraMenu()

• setSpectraMenu

  private boolean setSpectraMenu​(javajs.api.SC menu,
                                 javajs.util.Lst<java.lang.String> peaks)

• updateHeteroComputedMenu

  private void updateHeteroComputedMenu​(java.util.Map<java.lang.String,​java.lang.String> htHetero)

• updateSurfMoComputedMenu

  private void updateSurfMoComputedMenu​(java.util.Map<java.lang.String,​java.lang.Object> moData)

• updateFileTypeDependentMenus

  private void updateFileTypeDependentMenus()

• updateSceneComputedMenu

  private void updateSceneComputedMenu()

• updatePDBComputedMenus

  private void updatePDBComputedMenus()

• setSecStrucMenu

  private boolean setSecStrucMenu​(javajs.api.SC menu,
                                  java.util.Map<java.lang.String,​java.lang.Object> dssr)

• updateGroup3List

  private int updateGroup3List​(javajs.api.SC menu,
                               java.lang.String name)

• augmentGroup3List

  private int augmentGroup3List​(javajs.api.SC menu,
                                java.lang.String type,
                                boolean addSeparator)

• updateSYMMETRYComputedMenus

  private void updateSYMMETRYComputedMenus()

• updateSYMMETRYShowComputedMenu

  private void updateSYMMETRYShowComputedMenu()

• updateSYMMETRYSelectComputedMenu

  private void updateSYMMETRYSelectComputedMenu()

• updateFRAMESbyModelComputedMenu

  private void updateFRAMESbyModelComputedMenu()

• updateConfigurationComputedMenu

  private void updateConfigurationComputedMenu()

• updateModelSetComputedMenu

  private void updateModelSetComputedMenu()

• gti

  private java.lang.String gti​(java.lang.String s,
                               int n)

• gto

  private java.lang.String gto​(java.lang.String s,
                               java.lang.Object o)

• updateAboutSubmenu

  private void updateAboutSubmenu()

• updateLanguageSubmenu

  private void updateLanguageSubmenu()

• updateSpecialMenuItem

  private void updateSpecialMenuItem​(javajs.api.SC m)

• getSpecialLabel

  protected java.lang.String getSpecialLabel​(java.lang.String name,
                                             java.lang.String text)

  menus or menu items with SPECIAL in their name are sent here for on-the-fly labeling

  Parameters:

  name -

  text -

  Returns:

  revised text