NffReader

java.lang.Object
- org.jmol.jvxl.readers.SurfaceReader
- - org.jmol.jvxl.readers.SurfaceFileReader
  - - org.jmol.jvxl.readers.PolygonFileReader
    - - org.jmol.jvxl.readers.NffReader

All Implemented Interfaces:: VertexDataServer

class NffReader
extends PolygonFileReader

Field Summary

Fields
Modifier and Type Field Description

protected int nPolygons

private javajs.util.P3 pt

private java.util.Map<java.lang.String,java.lang.Integer> vertexMap
- Fields inherited from class org.jmol.jvxl.readers.PolygonFileReader
  nTriangles, nVertices
- Fields inherited from class org.jmol.jvxl.readers.SurfaceFileReader
  binarydoc, br, line, next, out
- Fields inherited from class org.jmol.jvxl.readers.SurfaceReader
  allowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes

Constructor Summary

Constructors
Constructor Description

NffReader()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`(package private) void`	`getSurfaceData()`
`private int`	`getVertex()`
`(package private) void`	`init2(SurfaceGenerator sg, java.io.BufferedReader br)`
`protected boolean`	`readVerticesAndPolygons()`
`protected void`	`setHeader()`

Methods inherited from class org.jmol.jvxl.readers.PolygonFileReader
init2PFR, readSurfaceData, readVolumeData, readVolumeParameters

Methods inherited from class org.jmol.jvxl.readers.SurfaceFileReader
closeReader, closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipTo

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

nPolygons
```
protected int nPolygons
```

vertexMap

private final java.util.Map<java.lang.String,java.lang.Integer> vertexMap

pt
```
private final javajs.util.P3 pt
```

Constructor Detail
- NffReader
```
NffReader()
```

Method Detail

init2

void init2(SurfaceGenerator sg,
           java.io.BufferedReader br)

Overrides:: init2 in class SurfaceFileReader

setHeader
```
protected void setHeader()
```

getSurfaceData
```
void getSurfaceData()
             throws java.lang.Exception
```
Specified by:

getSurfaceData in class PolygonFileReader

Throws:

java.lang.Exception

readVerticesAndPolygons

protected boolean readVerticesAndPolygons()

getVertex

private int getVertex()
               throws java.lang.Exception

Throws:: java.lang.Exception