CastepDensityReader

java.lang.Object
- org.jmol.jvxl.readers.SurfaceReader
- - org.jmol.jvxl.readers.SurfaceFileReader
  - - org.jmol.jvxl.readers.VolumeFileReader
    - - org.jmol.jvxl.readers.PeriodicVolumeFileReader
      - org.jmol.jvxl.readers.CastepDensityReader

All Implemented Interfaces:: VertexDataServer

class CastepDensityReader
extends PeriodicVolumeFileReader

Field Summary

Fields
Modifier and Type Field Description

private int nFilePoints

private int nSkip
- Fields inherited from class org.jmol.jvxl.readers.VolumeFileReader
  ac, boundingBox, canDownsample, downsampleFactor, downsampleRemainders, endOfData, isAngstroms, nData, negativeAtomCount, nSkipX, nSkipY, nSkipZ, nSurfaces
- Fields inherited from class org.jmol.jvxl.readers.SurfaceFileReader
  binarydoc, br, line, next, out
- Fields inherited from class org.jmol.jvxl.readers.SurfaceReader
  allowSigma, ANGSTROMS_PER_BOHR, anisotropy, center, cJvxlEdgeNaN, colorFractionBase, colorFractionRange, contourVertexCount, dataMax, dataMean, dataMin, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, eccentricityMatrix, eccentricityMatrixInverse, eccentricityRatio, eccentricityScale, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, haveSurfaceAtoms, isAnisotropic, isEccentric, isJvxl, isPeriodic, isProgressive, isQuiet, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorDensity, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingCubes, marchingSquares, meshData, meshDataServer, minMax, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, qpc, sg, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData, xyzMax, xyzMin, yzCount, yzPlanes

Constructor Summary

Constructors
Constructor Description

CastepDensityReader()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected void`	`getPeriodicVoxels()`
`protected void`	`gotoData(int n, int nPoints)`
`(package private) void`	`init2(SurfaceGenerator sg, java.io.BufferedReader br)`
`protected void`	`readParameters()`
`private void`	`skipPoints(int n)`

Methods inherited from class org.jmol.jvxl.readers.PeriodicVolumeFileReader
readSurfaceData

Methods inherited from class org.jmol.jvxl.readers.VolumeFileReader
checkAtomLine, closeReader, getNextVoxelValue, getPlane, getPlaneNCI, getSPFv, getSurfacePointAndFraction, getValue, getVoxelBitSet, init2VFR, initializeSurfaceData, nextVoxel, readSurfaceDataVFR, readVolumeData, readVolumeDataVFR, readVolumeParameters, readVoxelVector, recordData, skipComments, skipData, skipDataVFR, swapXZ

Methods inherited from class org.jmol.jvxl.readers.SurfaceFileReader
closeReaderSFR, discardTempData, getQuotedStringNext, getTokens, init, init2SFR, newBinaryDocument, parseFloat, parseFloatArray, parseFloatArrayStr, parseFloatRange, parseFloatStr, parseInt, parseIntNext, parseIntStr, rd, setOutputChannel, setStream, skipTo

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

nFilePoints
```
private int nFilePoints
```

nSkip
```
private int nSkip
```

Constructor Detail
- CastepDensityReader
```
CastepDensityReader()
```

Method Detail

init2

void init2(SurfaceGenerator sg,
           java.io.BufferedReader br)

Overrides:: init2 in class VolumeFileReader

gotoData

protected void gotoData(int n,
                        int nPoints)
                 throws java.lang.Exception

Overrides:: gotoData in class VolumeFileReader
Throws:: java.lang.Exception

readParameters
```
protected void readParameters()
                       throws java.lang.Exception
```
Specified by:

readParameters in class VolumeFileReader

Throws:

java.lang.Exception

getPeriodicVoxels
```
protected void getPeriodicVoxels()
                          throws java.lang.Exception
```
Specified by:

getPeriodicVoxels in class PeriodicVolumeFileReader

Throws:

java.lang.Exception

skipPoints
```
private void skipPoints(int n)
```