Package org.jmol.c

Enum STR

  • All Implemented Interfaces:
    java.io.Serializable, java.lang.Comparable<STR>
    public enum STR
extends java.lang.Enum<STR>

    • Field Summary

      Fields 
      Modifier and Type Field Description
      private int color  
      private int id  

    • Constructor Summary

      Constructors 
      Modifier Constructor Description
      private STR​(int id, int color)  

    • Method Summary

      All Methods Static Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      java.lang.String getBioStructureTypeName​(boolean isGeneric)  
      int getColor()  
      int getId()  
      static STR getProteinStructureType​(java.lang.String name)
      In DRuMS, RasMol, and Chime, quoting from http://www.umass.edu/microbio/rasmol/rascolor.htm The RasMol structure color scheme colors the molecule by protein secondary structure.
      private boolean isProtein()  
      static STR valueOf​(java.lang.String name)
      Returns the enum constant of this type with the specified name.
      static STR[] values()
      Returns an array containing the constants of this enum type, in the order they are declared.

      • Methods inherited from class java.lang.Enum

        clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

      • Methods inherited from class java.lang.Object

        getClass, notify, notifyAll, wait, wait, wait

    • Enum Constant Detail

      • NOT

        public static final STR NOT

      • NONE

        public static final STR NONE

      • TURN

        public static final STR TURN

      • SHEET

        public static final STR SHEET

      • HELIX

        public static final STR HELIX

      • DNA

        public static final STR DNA

      • RNA

        public static final STR RNA

      • CARBOHYDRATE

        public static final STR CARBOHYDRATE

      • HELIX310

        public static final STR HELIX310

      • HELIXALPHA

        public static final STR HELIXALPHA

      • HELIXPI

        public static final STR HELIXPI

      • ANNOTATION

        public static final STR ANNOTATION

    • Field Detail

      • id

        private int id

      • color

        private int color

    • Constructor Detail

      • STR

        private STR​(int id,
            int color)

    • Method Detail

      • values

        public static STR[] values()
        Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows: 
        for (STR c : STR.values())
    System.out.println(c);
        Returns:
        an array containing the constants of this enum type, in the order they are declared

      • valueOf

        public static STR valueOf​(java.lang.String name)
        Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)
        Parameters:
        name - the name of the enum constant to be returned.
        Returns:
        the enum constant with the specified name
        Throws:
        java.lang.IllegalArgumentException - if this enum type has no constant with the specified name
        java.lang.NullPointerException - if the argument is null

      • getId

        public int getId()

      • getColor

        public int getColor()

      • getProteinStructureType

        public static final STR getProteinStructureType​(java.lang.String name)
        In DRuMS, RasMol, and Chime, quoting from http://www.umass.edu/microbio/rasmol/rascolor.htm The RasMol structure color scheme colors the molecule by protein secondary structure. Structure Decimal RGB Hex RGB Alpha helices red-magenta [255,0,128] FF 00 80 * Beta strands yellow [255,200,0] FF C8 00 * Turns pale blue [96,128,255] 60 80 FF Other white [255,255,255] FF FF FF Values given in the 1994 RasMol 2.5 Quick Reference Card ([240,0,128] and [255,255,0]) are not correct for RasMol 2.6-beta-2a. This correction was made above on Dec 5, 1998.
        Parameters:
        name -
        Returns:
        0-3 or 7-9, but not dna, rna, carbohydrate

      • getBioStructureTypeName

        public java.lang.String getBioStructureTypeName​(boolean isGeneric)

      • isProtein

        private boolean isProtein()