java.lang.Object
- org.jmol.adapter.smarter.AtomIterator

All Implemented Interfaces:: JmolAdapterAtomIterator

class AtomIterator
extends java.lang.Object
implements JmolAdapterAtomIterator

Field Summary

Fields
Modifier and Type Field Description

private int ac

private Atom atom

private Atom[] atoms

private BS bsAtoms

private int iatom

Constructor Summary

Constructors
Constructor Description

AtomIterator(AtomSetCollection asc)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`char`	`getAltLoc()`
`java.lang.String`	`getAtomName()`
`int`	`getAtomSetIndex()`
`int`	`getAtomSite()`
`float`	`getBfactor()`
`int`	`getChainID()`
`int`	`getElementNumber()`
`int`	`getFormalCharge()`
`java.lang.String`	`getGroup3()`
`char`	`getInsertionCode()`
`boolean`	`getIsHetero()`
`float`	`getOccupancy()`
`float`	`getPartialCharge()`
`float`	`getRadius()`
`int`	`getSeqID()`
`int`	`getSequenceNumber()`
`int`	`getSerial()`
`BS`	`getSymmetry()`
`javajs.util.Lst<java.lang.Object>`	`getTensors()`
`java.lang.Object`	`getUniqueID()`
`javajs.util.V3`	`getVib()`	Note that atom.vib also serves to deliver specific data items.
`javajs.util.P3`	`getXYZ()`
`boolean`	`hasNext()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Field Detail
  - iatom
```
private int iatom
```
  - atom
```
private Atom atom
```
  - ac
```
private int ac
```
  - atoms
```
private Atom[] atoms
```
  - bsAtoms
```
private BS bsAtoms
```
- Constructor Detail
  - AtomIterator
```
AtomIterator(AtomSetCollection asc)
```
- Method Detail
  - hasNext
```
public boolean hasNext()
```
    Specified by:
    
    hasNext in interface JmolAdapterAtomIterator
  - getAtomSetIndex
```
public int getAtomSetIndex()
```
    Specified by:
    
    getAtomSetIndex in interface JmolAdapterAtomIterator
  - getSymmetry
```
public BS getSymmetry()
```
    Specified by:
    
    getSymmetry in interface JmolAdapterAtomIterator
  - getAtomSite
```
public int getAtomSite()
```
    Specified by:
    
    getAtomSite in interface JmolAdapterAtomIterator
  - getUniqueID
```
public java.lang.Object getUniqueID()
```
    Specified by:
    
    getUniqueID in interface JmolAdapterAtomIterator
  - getElementNumber
```
public int getElementNumber()
```
    Specified by:
    
    getElementNumber in interface JmolAdapterAtomIterator
  - getAtomName
```
public java.lang.String getAtomName()
```
    Specified by:
    
    getAtomName in interface JmolAdapterAtomIterator
  - getFormalCharge
```
public int getFormalCharge()
```
    Specified by:
    
    getFormalCharge in interface JmolAdapterAtomIterator
  - getPartialCharge
```
public float getPartialCharge()
```
    Specified by:
    
    getPartialCharge in interface JmolAdapterAtomIterator
  - getTensors
```
public javajs.util.Lst<java.lang.Object> getTensors()
```
    Specified by:
    
    getTensors in interface JmolAdapterAtomIterator
  - getRadius
```
public float getRadius()
```
    Specified by:
    
    getRadius in interface JmolAdapterAtomIterator
  - getVib
```
public javajs.util.V3 getVib()
```
    Note that atom.vib also serves to deliver specific data items.
    
    Specified by:
    
    getVib in interface JmolAdapterAtomIterator
  - getSeqID
```
public int getSeqID()
```
    Specified by:
    
    getSeqID in interface JmolAdapterAtomIterator
  - getBfactor
```
public float getBfactor()
```
    Specified by:
    
    getBfactor in interface JmolAdapterAtomIterator
  - getOccupancy
```
public float getOccupancy()
```
    Specified by:
    
    getOccupancy in interface JmolAdapterAtomIterator
  - getIsHetero
```
public boolean getIsHetero()
```
    Specified by:
    
    getIsHetero in interface JmolAdapterAtomIterator
  - getSerial
```
public int getSerial()
```
    Specified by:
    
    getSerial in interface JmolAdapterAtomIterator
  - getChainID
```
public int getChainID()
```
    Specified by:
    
    getChainID in interface JmolAdapterAtomIterator
  - getAltLoc
```
public char getAltLoc()
```
    Specified by:
    
    getAltLoc in interface JmolAdapterAtomIterator
  - getGroup3
```
public java.lang.String getGroup3()
```
    Specified by:
    
    getGroup3 in interface JmolAdapterAtomIterator
  - getSequenceNumber
```
public int getSequenceNumber()
```
    Specified by:
    
    getSequenceNumber in interface JmolAdapterAtomIterator
  - getInsertionCode
```
public char getInsertionCode()
```
    Specified by:
    
    getInsertionCode in interface JmolAdapterAtomIterator
  - getXYZ
```
public javajs.util.P3 getXYZ()
```
    Specified by:
    
    getXYZ in interface JmolAdapterAtomIterator

Modifier and Type	Field	Description
`private int`	`ac`
`private Atom`	`atom`
`private Atom[]`	`atoms`
`private BS`	`bsAtoms`
`private int`	`iatom`

Class AtomIterator

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

iatom

atom

ac

atoms

bsAtoms

Constructor Detail

AtomIterator

Method Detail

hasNext

getAtomSetIndex

getSymmetry

getAtomSite

getUniqueID

getElementNumber

getAtomName

getFormalCharge

getPartialCharge

getTensors

getRadius

getVib

getSeqID

getBfactor

getOccupancy

getIsHetero

getSerial

getChainID

getAltLoc

getGroup3

getSequenceNumber

getInsertionCode

getXYZ