FullBEDFeature.Exon2 (htsjdk 2.23.0 API)

java.lang.Object
- htsjdk.tribble.bed.FullBEDFeature.Exon2

Enclosing class:: FullBEDFeature

public class FullBEDFeature.Exon2
extends Object

Constructor Summary

Constructors
Constructor Description

Exon2(int start, int end, int codingStart, int codingDne)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`getAminoAcidNumber(int genomeCoordinate)`
`int`	`getCdEnd()`	Method description
`int`	`getCdStart()`	Method description
`int`	`getCodingLength()`	Method description
`int`	`getNumber()`
`String`	`getValueString(double position)`	Method description
`void`	`setCodingEnd(int codingEnd)`	Method description
`void`	`setCodingStart(int codingStart)`	Method description
`void`	`setMrnaBase(int base)`
`void`	`setNumber(int number)`
`void`	`setPhase(int phase)`	Method description
`void`	`setReadingFrame(int offset)`	Method description
`void`	`setUTR(boolean utr)`	Flag indicating that the entire exon is the UTR.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

Exon2

public Exon2(int start,
             int end,
             int codingStart,
             int codingDne)

Method Detail

setMrnaBase
```
public void setMrnaBase(int base)
```

getAminoAcidNumber

public int getAminoAcidNumber(int genomeCoordinate)

setUTR
```
public void setUTR(boolean utr)
```
Flag indicating that the entire exon is the UTR.

Parameters:

utr -

setCodingStart
```
public void setCodingStart(int codingStart)
```
Method description

Parameters:

codingStart -

setCodingEnd
```
public void setCodingEnd(int codingEnd)
```
Method description

Parameters:

codingEnd -

setReadingFrame
```
public void setReadingFrame(int offset)
```
Method description

Parameters:

offset -

setPhase
```
public void setPhase(int phase)
```
Method description

Parameters:

phase -

getCdStart
```
public int getCdStart()
```
Method description

Returns:

getCdEnd
```
public int getCdEnd()
```
Method description

Returns:

getCodingLength
```
public int getCodingLength()
```
Method description

Returns:

getValueString

public String getValueString(double position)

Method description

Returns:

getNumber
```
public int getNumber()
```

setNumber
```
public void setNumber(int number)
```