java.lang.Object
- java.io.InputStream
- - htsjdk.samtools.util.CoordSpanInputSteam

All Implemented Interfaces:

Closeable, AutoCloseable
```
public class CoordSpanInputSteam
extends InputStream
```
An input stream that wraps a SeekableStream to produce only bytes specified within coordinates. Created by vadim on 25/03/2015.

Constructor Summary

Constructors
Constructor	Description
`CoordSpanInputSteam(SeekableStream delegate, long[] coords)`	Wrap `SeekableStream` to read only bytes within boundaries specified in the coords array.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`available()`	Returns how many bytes are left in the current chunk.
`void`	`close()`
`int`	`read()`
`int`	`read(byte[] buffer, int offset, int length)`

Methods inherited from class java.io.InputStream
mark, markSupported, nullInputStream, read, readAllBytes, readNBytes, readNBytes, reset, skip, transferTo

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - CoordSpanInputSteam
```
public CoordSpanInputSteam(SeekableStream delegate,
                           long[] coords)
                    throws IOException
```
    Wrap SeekableStream to read only bytes within boundaries specified in the coords array. The coords array consists of [inclusive; exclusive) pairs of long coordinates. This constructor will throw exception if a start coordinate is beyond stream length. End coordinates are capped at the stream length.
    
    Throws:
    
    IOException
- Method Detail
  - read
```
public int read()
         throws IOException
```
    Specified by:
    
    read in class InputStream
    
    Throws:
    
    IOException
  - read
```
public int read(byte[] buffer,
                int offset,
                int length)
         throws IOException
```
    Overrides:
    
    read in class InputStream
    
    Throws:
    
    IOException
  - available
```
public int available()
              throws IOException
```
    Returns how many bytes are left in the current chunk.
    
    Overrides:
    
    available in class InputStream
    
    Returns:
    
    number of unread bytes in the current chunk.
    
    Throws:
    
    IOException
  - close
```
public void close()
           throws IOException
```
    Specified by:
    
    close in interface AutoCloseable
    
    Specified by:
    
    close in interface Closeable
    
    Overrides:
    
    close in class InputStream
    
    Throws:
    
    IOException

Class CoordSpanInputSteam

Constructor Summary

Method Summary

Methods inherited from class java.io.InputStream

Methods inherited from class java.lang.Object

Constructor Detail

CoordSpanInputSteam

Method Detail

read

read

available

close